ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024006.1| Zea mays clone EL01N0311H08 mRNA sequence 186 3e-44
2ref|XM_550362.1| Oryza sativa (japonica cultivar-group), mRNA 176 3e-41
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
4dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic D... 176 3e-41
5dbj|AK099780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
6dbj|AK066230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
7dbj|AK065529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
8dbj|AK062042.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
9gb|AY104169.1| Zea mays PCO099315 mRNA sequence 172 5e-40
10ref|XM_475644.1| Oryza sativa (japonica cultivar-group), predic... 170 2e-39
11gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome... 170 2e-39
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
13dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
14ref|NM_106656.2| Arabidopsis thaliana SUS2 (ABNORMAL SUSPENSOR 2... 48 0.018
15gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18... 48 0.018
16ref|NM_120038.3| Arabidopsis thaliana unknown protein AT4G38780 ... 44 0.28
17ref|XM_883184.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
18ref|XM_883183.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
19ref|XM_883182.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
20ref|XM_870142.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
21ref|XM_883214.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
22ref|XM_883212.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
23ref|XM_883211.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
24ref|XM_883208.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
25ref|XM_883204.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
26ref|XM_883203.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
27ref|XM_883199.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
28ref|XM_883195.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
29ref|XM_883190.1| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
30ref|XM_583965.2| PREDICTED: Bos taurus similar to Pre-mRNA proce... 44 0.28
31ref|NM_006445.3| Homo sapiens PRP8 pre-mRNA processing factor 8 ... 44 0.28
32gb|BC064370.1| Homo sapiens PRP8 pre-mRNA processing factor 8 ho... 44 0.28
33gb|BC034545.1| Homo sapiens PRP8 pre-mRNA processing factor 8 ho... 44 0.28
34gb|BC000579.2| Homo sapiens PRP8 pre-mRNA processing factor 8 ho... 44 0.28
35emb|AL596219.2| Human DNA sequence from clone RP11-659P12 on chr... 44 0.28
36emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 44 0.28
37emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BA... 44 0.28
38emb|CR624543.1| full-length cDNA clone CS0DK002YE23 of HeLa cell... 44 0.28
39emb|CR605208.1| full-length cDNA clone CS0DI086YI24 of Placenta ... 44 0.28
40gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, co... 44 0.28
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
42emb|BX828607.1|CNS0A3IK Arabidopsis thaliana Full-length cDNA Co... 44 0.28
43gb|AF092565.1|AF092565 Homo sapiens splicing factor Prp8 mRNA, c... 44 0.28
44dbj|AK222905.1| Homo sapiens mRNA for U5 snRNP-specific protein ... 44 0.28
45gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana... 44 0.28
46dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
47emb|BX649099.1|HSM809250 Homo sapiens mRNA; cDNA DKFZp686L08123 ... 44 0.28
48dbj|AK058034.1| Homo sapiens cDNA FLJ25305 fis, clone SYN00254, ... 44 0.28
49dbj|AB007510.1| Homo sapiens mRNA for PRP8 protein, complete cds 44 0.28
50ref|XM_415805.1| PREDICTED: Gallus gallus similar to splicing fa... 40 4.4
51gb|BC045266.1| Xenopus laevis pre-mRNA processing factor 8, mRNA... 40 4.4
52emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in... 40 4.4
53ref|NM_136891.2| Drosophila melanogaster CG8877-RA (CG8877), mRNA 40 4.4
54ref|XM_694534.1| PREDICTED: Danio rerio zgc:56504 (zgc:56504), mRNA 40 4.4
55gb|AY051826.1| Drosophila melanogaster LD33339 full length cDNA 40 4.4
56gb|AC007475.7|AC007475 Drosophila melanogaster, chromosome 2R, r... 40 4.4
57gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448... 40 4.4
58gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27... 40 4.4
59gb|AC144936.4| Mus musculus BAC clone RP24-238C11 from 6, comple... 40 4.4 
>gb|BT024006.1| Zea mays clone EL01N0311H08 mRNA sequence
          Length = 1486

 Score =  186 bits (94), Expect = 3e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaa 205
            ||||| ||| ||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct: 1253 ctacgtgaatgtgtcctccctatcaccttcagcgacctctccctcctcgatgttgctgaa 1194

                                                                        
Query: 206  ctccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagctt 265
            ||| ||||||||||| ||||||||||||||||| |||||||| |||||  ||||||||||
Sbjct: 1193 ctcaaggaagtgtgtcggcctgtggtcctcgtgatagaagtcccggggcatgcccagctt 1134

                                                                  
Query: 266  catgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            |||| ||||||||||| | |||||| |||| ||||||||||||||| |||||||
Sbjct: 1133 catgttgtacttcatctgtgggtcgtgcttcactcccatgaagttgaagttcca 1080
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>ref|XM_550362.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 7053

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Minus

                                                                        
Query: 147  tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
            |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 7052 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 6993

                                                                        
Query: 207  tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
            || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 6992 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 6933

                                                                 
Query: 267  atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 6932 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 6880
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Plus

                                                                           
Query: 147     tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
               |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 3363176 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 3363235

                                                                           
Query: 207     tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
               || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 3363236 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 3363295

                                                                    
Query: 267     atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
               ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 3363296 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 3363348
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>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone
             P0680A03
          Length = 156054

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Plus

                                                                         
Query: 147   tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
             |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 54730 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 54789

                                                                         
Query: 207   tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
             || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 54790 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 54849

                                                                  
Query: 267   atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
             ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 54850 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 54902
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>dbj|AK099780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095K10, full
            insert sequence
          Length = 3618

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Minus

                                                                        
Query: 147  tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
            |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 3393 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 3334

                                                                        
Query: 207  tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
            || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 3333 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 3274

                                                                 
Query: 267  atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 3273 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 3221
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>dbj|AK066230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057K01, full
            insert sequence
          Length = 2182

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Minus

                                                                        
Query: 147  tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
            |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 1909 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 1850

                                                                        
Query: 207  tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
            || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 1849 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 1790

                                                                 
Query: 267  atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1789 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 1737
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>dbj|AK065529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031D19, full
            insert sequence
          Length = 2204

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Minus

                                                                        
Query: 147  tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
            |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 1920 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 1861

                                                                        
Query: 207  tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
            || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 1860 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 1801

                                                                 
Query: 267  atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 1800 atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 1748
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>dbj|AK062042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A05, full
            insert sequence
          Length = 1339

 Score =  176 bits (89), Expect = 3e-41
 Identities = 152/173 (87%)
 Strand = Plus / Minus

                                                                        
Query: 147  tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
            |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 1066 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 1007

                                                                        
Query: 207  tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagcttc 266
            || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 1006 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgccaagcttc 947

                                                                 
Query: 267  atgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 946  atgttgtacttcatcagcgggtcgtgcttgactcccatgaagttgaagttcca 894
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>gb|AY104169.1| Zea mays PCO099315 mRNA sequence
          Length = 1640

 Score =  172 bits (87), Expect = 5e-40
 Identities = 154/175 (88%), Gaps = 1/175 (0%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaa 205
            ||||| ||| ||||||||||| || || ||||| ||||| |||||||| |||||||||||
Sbjct: 1407 ctacgtgaatgtgtcctccctatcaccttcagcgacctctccctcctcgatgttgctgaa 1348

                                                                        
Query: 206  ctccaggaagtgtgttggcctgtggtcctcgtggtagaagt-cgcggggtgtgcccagct 264
            ||| ||||||||||| ||||||||||||||||| ||||||| | |||||  |||||||||
Sbjct: 1347 ctcaaggaagtgtgtcggcctgtggtcctcgtgatagaagtccccggggcatgcccagct 1288

                                                                   
Query: 265  tcatgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            ||||| ||||||||||| | |||||| |||| ||||||||||||||| |||||||
Sbjct: 1287 tcatgttgtacttcatctgtgggtcgtgcttcactcccatgaagttgaagttcca 1233
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>ref|XM_475644.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 7053

 Score =  170 bits (86), Expect = 2e-39
 Identities = 152/174 (87%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaa 205
            ||||| ||||||||||||||| || || || || ||||||||||| || |||||||||||
Sbjct: 7053 ctacgtgaaggtgtcctccctatcaccttccgcgacctcgccctcgtcgatgttgctgaa 6994

                                                                        
Query: 206  ctccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagctt 265
            ||| ||||| ||||| ||||  ||||||||||| |||||||| | ||| ||||| |||||
Sbjct: 6993 ctcgaggaaatgtgtcggccgatggtcctcgtgatagaagtccctgggcgtgccaagctt 6934

                                                                  
Query: 266  catgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
            |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 6933 catgttgtacttcatcagcgggtcgtgcttcactcccatgaagttgaagttcca 6880
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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score =  170 bits (86), Expect = 2e-39
 Identities = 152/174 (87%)
 Strand = Plus / Plus

                                                                         
Query: 146   ctacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaa 205
             ||||| ||||||||||||||| || || || || ||||||||||| || |||||||||||
Sbjct: 66576 ctacgtgaaggtgtcctccctatcaccttccgcgacctcgccctcgtcgatgttgctgaa 66635

                                                                         
Query: 206   ctccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagctt 265
             ||| ||||| ||||| ||||  ||||||||||| |||||||| | ||| ||||| |||||
Sbjct: 66636 ctcgaggaaatgtgtcggccgatggtcctcgtgatagaagtccctgggcgtgccaagctt 66695

                                                                   
Query: 266   catgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
             |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 66696 catgttgtacttcatcagcgggtcgtgcttcactcccatgaagttgaagttcca 66749
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  170 bits (86), Expect = 2e-39
 Identities = 152/174 (87%)
 Strand = Plus / Plus

                                                                           
Query: 146     ctacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaa 205
               ||||| ||||||||||||||| || || || || ||||||||||| || |||||||||||
Sbjct: 3644229 ctacgtgaaggtgtcctccctatcaccttccgcgacctcgccctcgtcgatgttgctgaa 3644288

                                                                           
Query: 206     ctccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgcccagctt 265
               ||| ||||| ||||| ||||  ||||||||||| |||||||| | ||| ||||| |||||
Sbjct: 3644289 ctcgaggaaatgtgtcggccgatggtcctcgtgatagaagtccctgggcgtgccaagctt 3644348

                                                                     
Query: 266     catgctgtacttcatcagcgggtcgggcttgactcccatgaagttgtagttcca 319
               |||| |||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct: 3644349 catgttgtacttcatcagcgggtcgtgcttcactcccatgaagttgaagttcca 3644402
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>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0015I14
          Length = 150650

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                          
Query: 147    tacgagaaggtgtcctccctgtccccctcagcaacctcgccctcctcaatgttgctgaac 206
              |||| ||||||||||||||| || || || || ||||||||||| || ||||||||||||
Sbjct: 150539 tacgtgaaggtgtcctccctatcaccttctgcgacctcgccctcgtcgatgttgctgaac 150598

                                                                  
Query: 207    tccaggaagtgtgttggcctgtggtcctcgtggtagaagtcgcggggtgtgc 258
              || ||||| || || ||||  ||||||||||| |||||||| ||||| ||||
Sbjct: 150599 tcgaggaaatgcgtcggccgatggtcctcgtgatagaagtcccggggcgtgc 150650
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>ref|NM_106656.2| Arabidopsis thaliana SUS2 (ABNORMAL SUSPENSOR 2) AT1G80070 (SUS2)
            mRNA, complete cds
          Length = 7386

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 187  cctcctcaatgttgctgaactccaggaa 214
            ||||||| ||||||||||||||||||||
Sbjct: 7108 cctcctccatgttgctgaactccaggaa 7081
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>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
             sequence
          Length = 116905

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 187   cctcctcaatgttgctgaactccaggaa 214
             ||||||| ||||||||||||||||||||
Sbjct: 64297 cctcctccatgttgctgaactccaggaa 64270
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>ref|NM_120038.3| Arabidopsis thaliana unknown protein AT4G38780 mRNA, complete cds
          Length = 7060

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 298  ctcccatgaagttgtagttcca 319
            ||||||||||||||||||||||
Sbjct: 6853 ctcccatgaagttgtagttcca 6832
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>ref|XM_883184.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 5
            (LOC507371), mRNA
          Length = 7263

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6935 cccatgaagttgtagttccacg 6914
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>ref|XM_883183.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 4
            (LOC507371), mRNA
          Length = 7286

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6959 cccatgaagttgtagttccacg 6938
to top
>ref|XM_883182.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 3
            (LOC507371), mRNA
          Length = 7290

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6962 cccatgaagttgtagttccacg 6941
to top
>ref|XM_870142.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 2
            (LOC507371), mRNA
          Length = 7284

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6956 cccatgaagttgtagttccacg 6935
to top
>ref|XM_883214.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 14
            (LOC507371), mRNA
          Length = 7211

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6883 cccatgaagttgtagttccacg 6862
to top
>ref|XM_883212.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 13
            (LOC507371), mRNA
          Length = 7287

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6959 cccatgaagttgtagttccacg 6938
to top
>ref|XM_883211.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 12
            (LOC507371), mRNA
          Length = 7305

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6977 cccatgaagttgtagttccacg 6956
to top
>ref|XM_883208.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 11
            (LOC507371), mRNA
          Length = 7302

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6974 cccatgaagttgtagttccacg 6953
to top
>ref|XM_883204.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 10
            (LOC507371), mRNA
          Length = 7341

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 7013 cccatgaagttgtagttccacg 6992
to top
>ref|XM_883203.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 9
            (LOC507371), mRNA
          Length = 7362

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 7034 cccatgaagttgtagttccacg 7013
to top
>ref|XM_883199.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 8
            (LOC507371), mRNA
          Length = 7266

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6938 cccatgaagttgtagttccacg 6917
to top
>ref|XM_883195.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 7
            (LOC507371), mRNA
          Length = 7195

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6867 cccatgaagttgtagttccacg 6846
to top
>ref|XM_883190.1| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 6
            (LOC507371), mRNA
          Length = 7302

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6974 cccatgaagttgtagttccacg 6953
to top
>ref|XM_583965.2| PREDICTED: Bos taurus similar to Pre-mRNA processing splicing factor
            8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5
            snRNP-specific protein) (p220), transcript variant 1
            (LOC507371), mRNA
          Length = 7104

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6776 cccatgaagttgtagttccacg 6755
to top
>ref|NM_006445.3| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S.
            cerevisiae) (PRPF8), mRNA
          Length = 7311

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6968 cccatgaagttgtagttccacg 6947
to top
>gb|BC064370.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S.
            cerevisiae), mRNA (cDNA clone MGC:74762 IMAGE:5587081),
            complete cds
          Length = 7276

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6933 cccatgaagttgtagttccacg 6912
to top
>gb|BC034545.1| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S.
            cerevisiae), mRNA (cDNA clone IMAGE:4473590), with
            apparent retained intron
          Length = 1424

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1008 cccatgaagttgtagttccacg 987
to top
>gb|BC000579.2| Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S.
            cerevisiae), mRNA (cDNA clone IMAGE:3342958), complete
            cds
          Length = 1420

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1061 cccatgaagttgtagttccacg 1040
to top
>emb|AL596219.2| Human DNA sequence from clone RP11-659P12 on chromosome 6, complete
             sequence
          Length = 85151

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 199   tgctgaactccaggaagtgtgt 220
             ||||||||||||||||||||||
Sbjct: 78982 tgctgaactccaggaagtgtgt 79003
to top
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   ctcccatgaagttgtagttcca 319
             ||||||||||||||||||||||
Sbjct: 15738 ctcccatgaagttgtagttcca 15759
to top
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project)
          Length = 88164

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 298   ctcccatgaagttgtagttcca 319
             ||||||||||||||||||||||
Sbjct: 48153 ctcccatgaagttgtagttcca 48174
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>emb|CR624543.1| full-length cDNA clone CS0DK002YE23 of HeLa cells Cot 25-normalized
            of Homo sapiens (human)
          Length = 1796

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1503 cccatgaagttgtagttccacg 1482
to top
>emb|CR605208.1| full-length cDNA clone CS0DI086YI24 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1419

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1092 cccatgaagttgtagttccacg 1071
to top
>gb|AC130343.7| Homo sapiens chromosome 17, clone RP11-961A15, complete sequence
          Length = 217253

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 300    cccatgaagttgtagttccacg 321
              ||||||||||||||||||||||
Sbjct: 100621 cccatgaagttgtagttccacg 100642
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 141      tacgactacgagaaggtgtcct 162
                ||||||||||||||||||||||
Sbjct: 23407717 tacgactacgagaaggtgtcct 23407696
to top
>emb|BX828607.1|CNS0A3IK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL20ZG08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 735

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 298 ctcccatgaagttgtagttcca 319
           ||||||||||||||||||||||
Sbjct: 447 ctcccatgaagttgtagttcca 426
to top
>gb|AF092565.1|AF092565 Homo sapiens splicing factor Prp8 mRNA, complete cds
          Length = 7239

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6892 cccatgaagttgtagttccacg 6871
to top
>dbj|AK222905.1| Homo sapiens mRNA for U5 snRNP-specific protein variant, clone:
            HRC03173
          Length = 1423

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1044 cccatgaagttgtagttccacg 1023
to top
>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome
             IV, complete sequence
          Length = 94770

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 298   ctcccatgaagttgtagttcca 319
             ||||||||||||||||||||||
Sbjct: 32751 ctcccatgaagttgtagttcca 32730
to top
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 141   tacgactacgagaaggtgtcct 162
             ||||||||||||||||||||||
Sbjct: 89554 tacgactacgagaaggtgtcct 89533
to top
>emb|BX649099.1|HSM809250 Homo sapiens mRNA; cDNA DKFZp686L08123 (from clone DKFZp686L08123)
          Length = 11647

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 300   cccatgaagttgtagttccacg 321
             ||||||||||||||||||||||
Sbjct: 11297 cccatgaagttgtagttccacg 11276
to top
>dbj|AK058034.1| Homo sapiens cDNA FLJ25305 fis, clone SYN00254, highly similar to
            Homo sapiens mRNA for PRP8 protein
          Length = 1897

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 1571 cccatgaagttgtagttccacg 1550
to top
>dbj|AB007510.1| Homo sapiens mRNA for PRP8 protein, complete cds
          Length = 7221

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 300  cccatgaagttgtagttccacg 321
            ||||||||||||||||||||||
Sbjct: 6895 cccatgaagttgtagttccacg 6874
to top
>ref|XM_415805.1| PREDICTED: Gallus gallus similar to splicing factor Prp8 (LOC417559),
            mRNA
          Length = 7356

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  cccatgaagttgtagttcca 319
            ||||||||||||||||||||
Sbjct: 7076 cccatgaagttgtagttcca 7057
to top
>gb|BC045266.1| Xenopus laevis pre-mRNA processing factor 8, mRNA (cDNA clone
            MGC:52804 IMAGE:4724870), complete cds
          Length = 7393

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  cccatgaagttgtagttcca 319
            ||||||||||||||||||||
Sbjct: 6937 cccatgaagttgtagttcca 6918
to top
>emb|CR522882.5| Zebrafish DNA sequence from clone CH211-209M4 in linkage group 15,
             complete sequence
          Length = 129430

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cccatgaagttgtagttcca 319
             ||||||||||||||||||||
Sbjct: 69906 cccatgaagttgtagttcca 69887
to top
>ref|NM_136891.2| Drosophila melanogaster CG8877-RA (CG8877), mRNA
          Length = 7317

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  cccatgaagttgtagttcca 319
            ||||||||||||||||||||
Sbjct: 7034 cccatgaagttgtagttcca 7015
to top
>ref|XM_694534.1| PREDICTED: Danio rerio zgc:56504 (zgc:56504), mRNA
          Length = 9226

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  cccatgaagttgtagttcca 319
            ||||||||||||||||||||
Sbjct: 6912 cccatgaagttgtagttcca 6893
to top
>gb|AY051826.1| Drosophila melanogaster LD33339 full length cDNA
          Length = 4296

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  cccatgaagttgtagttcca 319
            ||||||||||||||||||||
Sbjct: 4000 cccatgaagttgtagttcca 3981
to top
>gb|AC007475.7|AC007475 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
              BACR04E21, complete sequence
          Length = 173613

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cccatgaagttgtagttcca 319
              ||||||||||||||||||||
Sbjct: 147978 cccatgaagttgtagttcca 147997
to top
>gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448G15, complete sequence
          Length = 199450

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    caggaagtgtgttggcctgtggtc 232
              ||||||| ||||||||||||||||
Sbjct: 108294 caggaagagtgttggcctgtggtc 108317
to top
>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete
              sequence
          Length = 292919

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    cccatgaagttgtagttcca 319
              ||||||||||||||||||||
Sbjct: 158823 cccatgaagttgtagttcca 158842
to top
>gb|AC144936.4| Mus musculus BAC clone RP24-238C11 from 6, complete sequence
          Length = 174789

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gtgtcctccctgtccccctc 175
             ||||||||||||||||||||
Sbjct: 82119 gtgtcctccctgtccccctc 82138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,203,048
Number of Sequences: 3902068
Number of extensions: 2203048
Number of successful extensions: 41173
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41066
Number of HSP's gapped (non-prelim): 106
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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