ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FABP5_CAEEL (O01814) Fatty acid-binding protein homolog 5 33 0.18
2SODM_THEAQ (P53653) Superoxide dismutase [Mn] (EC 1.15.1.1) 28 4.5
3TRK1_SACBA (P28569) High-affinity potassium transport protein 28 4.5
4Y037_MYCPN (P75077) Hypothetical protein MPN037 (B01_orf147) 28 7.7

>FABP5_CAEEL (O01814) Fatty acid-binding protein homolog 5|
          Length = 136

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 2   DMLRNISNLFTLANASCTRQPLCGGGLRIRDNAHRMHTQQLSTDKNTTV 148
           D L+ +     L  A+C  +P     L I+ N ++ H  QLST KNTT+
Sbjct: 20  DYLKEVGVGLLLRKAACAAKPT----LEIKVNGNKWHVNQLSTFKNTTL 64



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>SODM_THEAQ (P53653) Superoxide dismutase [Mn] (EC 1.15.1.1)|
          Length = 203

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 106 DAHPAAKHRQEHHGGTVNQLN-IIERTKETLAHIVERELRTMTRLICQVQ 252
           DA     H Q+HHG  V  LN  +E+        VE  LR +T L   +Q
Sbjct: 21  DARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQ 70



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>TRK1_SACBA (P28569) High-affinity potassium transport protein|
          Length = 1241

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  RDNAHRMHTQQLSTDKNTTVAPLTSS 166
           RDN+HR  ++ +S+D N T  PL  +
Sbjct: 675 RDNSHRNGSEDVSSDSNETTYPLNGN 700



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>Y037_MYCPN (P75077) Hypothetical protein MPN037 (B01_orf147)|
          Length = 147

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 275 SRWNQLMRWTWQISLVMVRSSL-STMWASVSFVRSIILSWL 156
           S W+ L+ W W I+  + RS+L ST W        I+ +WL
Sbjct: 19  STWSSLICWPWTITTSVSRSTLSSTTW--------ILWTWL 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,513,000
Number of Sequences: 219361
Number of extensions: 935911
Number of successful extensions: 2820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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