ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl47a02 |
|---|---|
| Clone Library Name | barley_pub |
>ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like protein 3)| Length = 317 Score = 30.8 bits (68), Expect = 0.82 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +2 Query: 137 KQSDLQHRRTPSPSSQNTHHKS 202 +QS ++ R+PSPS++ THH+S Sbjct: 191 RQSTMRSARSPSPSARGTHHRS 212
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +3 Query: 69 PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 203 PL ++ +PS LRFS+S T S+K TS AK KV Sbjct: 29 PLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKV 73
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = +3 Query: 69 PLQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKV 203 PL ++ +PS LRFS+S T S+K TS AK KV Sbjct: 29 PLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKV 73
>YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I| Length = 521 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -2 Query: 196 VMCVLAAWRRRPSMLEVALFESNSVLLV 113 V+ VL AWR SML V +FE+ LLV Sbjct: 192 VLLVLIAWRPEGSMLSVRIFETAVALLV 219
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%) Frame = +2 Query: 104 EVFNQQNRIRLKQSDLQHRRTPSPSSQNT---HHKSVHIYCQP 223 E +Q +++ + ++ RRTPSPSS++ HH+ H+ P Sbjct: 643 ERVEEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPP 685
>NOD_DROME (P18105) Kinesin-like protein Nod| Length = 666 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 96 SLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITK--VCTFTANQLNGSNY 242 S LRF TS +L N + + L A TH+ + +CT TA + N +N+ Sbjct: 309 STLRFGTSAKKLRLNPMQVARQKQSLAARTTHVFRQALCTSTAIKSNAANH 359
>CNTN2_CHICK (P28685) Contactin-2 precursor (Axonin-1)| Length = 1036 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +1 Query: 277 WKRASAPHRSSKHFAQATQFVGLVSPFQV 363 W A PH S H+ + +G +PF+V Sbjct: 753 WLTARVPHAESLHYVYRNESIGPYTPFEV 781
>GAPN_PEA (P81406) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase| (EC 1.2.1.9) (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase) Length = 496 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +1 Query: 172 SKQPKHTSQKCAHLLPTSSMDQITSAQNDAISFHCWKRASAPHRSS 309 +++P++ Q C+ MD SAQ WKRA H+++ Sbjct: 40 TRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAA 85
>DAX1_MOUSE (Q61066) Nuclear receptor 0B1 (Nuclear receptor DAX-1)| Length = 472 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +1 Query: 136 QTKRPPT*KDAFSKQPKHTSQKCAHLLPTSSMDQITSAQNDAISFHCW 279 +T+ P + ++QP+ S + HLLP +++ I S F CW Sbjct: 329 ETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKS-----FFFKCW 371
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Frame = -2 Query: 235 DPLSWLAVNVHTFVMCVLAAWRRRPSM--LEVALFESNSVLLVENLKS-------EDGT* 83 +P++WL+ NVH V+C RP L V + S+S L L S D + Sbjct: 603 EPVTWLSKNVH--VVCARVGVLARPDAKGLHVQCYFSDSTLSPGRLTSSSSSPVTRDSSV 660 Query: 82 IACSG*LYLCRPVDCILH 29 SG L +C P I H Sbjct: 661 FTSSGTLIVC-PASLIHH 677
>G6PI_ZYMMO (P28718) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 507 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 72 LQAIQVPSSLLRFSTSKTELDSNKATSNIEGRLLQAAKTHITKVCTFTANQLN 230 L + V ++ LRF SK LDS K T+ +LL+A + F ++N Sbjct: 36 LSGLVVETAKLRFDFSKNHLDSQKLTA--FKKLLEACDFDARRKALFAGEKIN 86
>MURA_CORGL (Q8NML5) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 418 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 296 RTVLPNTSHRQPSL*DLCLLFRSFRAHI 379 RTVL N + R+P + DLC + RS A+I Sbjct: 180 RTVLDNAA-REPEIVDLCRMLRSMGANI 206
>TRMD_STRMU (Q8DUN6) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 240 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 175 WRRRPSMLEVALFESNSVLLVENLKSE 95 W RRP +LE F L+E +KSE Sbjct: 211 WERRPDLLEHYQFTQEEKQLLEKIKSE 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,228,970 Number of Sequences: 219361 Number of extensions: 1107981 Number of successful extensions: 2887 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2887 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
