ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl47a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 186 1e-44
2gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, com... 38 6.9
3gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, co... 38 6.9

>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
            complete cds
          Length = 3054

 Score =  186 bits (94), Expect = 1e-44
 Identities = 106/110 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    acataaatatatatcatcgggtcctttaattataattgggggctcattcccattataccc 60
            ||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct: 3048 acatatatatatatcatcgtgtcctttaattataatttggtgctcattcccattataccc 2989

                                                              
Query: 61   accgccgggccaagagactgaagacactcttatttacgcctagttgagtt 110
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 accgccgggccaagagactgaagacactcttatttacgcctagttgagtt 2939



 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 126  aggcagctcaaatggagat 144
            |||||||||||||||||||
Sbjct: 2923 aggcagctcaaatggagat 2905



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>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence
          Length = 191607

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 45   cattcccattatacccacc 63
            |||||||||||||||||||
Sbjct: 7126 cattcccattatacccacc 7144



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>gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, complete sequence
          Length = 166655

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     cattcccattatacccacc 63
              |||||||||||||||||||
Sbjct: 110263 cattcccattatacccacc 110281


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,361,719
Number of Sequences: 3902068
Number of extensions: 1361719
Number of successful extensions: 92679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92667
Number of HSP's gapped (non-prelim): 12
length of query: 144
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 123
effective length of database: 17,151,101,840
effective search space: 2109585526320
effective search space used: 2109585526320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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