Clone Name | rbastl47a01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... | 186 | 1e-44 | 2 | gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, com... | 38 | 6.9 | 3 | gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, co... | 38 | 6.9 |
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>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 186 bits (94), Expect = 1e-44 Identities = 106/110 (96%) Strand = Plus / Minus Query: 1 acataaatatatatcatcgggtcctttaattataattgggggctcattcccattataccc 60 ||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct: 3048 acatatatatatatcatcgtgtcctttaattataatttggtgctcattcccattataccc 2989 Query: 61 accgccgggccaagagactgaagacactcttatttacgcctagttgagtt 110 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2988 accgccgggccaagagactgaagacactcttatttacgcctagttgagtt 2939 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 aggcagctcaaatggagat 144 ||||||||||||||||||| Sbjct: 2923 aggcagctcaaatggagat 2905
>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence Length = 191607 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cattcccattatacccacc 63 ||||||||||||||||||| Sbjct: 7126 cattcccattatacccacc 7144
>gb|AC102688.10| Mus musculus chromosome 5, clone RP24-138J15, complete sequence Length = 166655 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cattcccattatacccacc 63 ||||||||||||||||||| Sbjct: 110263 cattcccattatacccacc 110281 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,361,719 Number of Sequences: 3902068 Number of extensions: 1361719 Number of successful extensions: 92679 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92667 Number of HSP's gapped (non-prelim): 12 length of query: 144 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 123 effective length of database: 17,151,101,840 effective search space: 2109585526320 effective search space used: 2109585526320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)