ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46h11 |
|---|---|
| Clone Library Name | barley_pub |
>TPP2_RAT (Q64560) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/52 (28%), Positives = 31/52 (59%) Frame = -1 Query: 333 GTALKVLNDMIQEDSEQPKKKLYDLKIQLIEEIGWAHVSAYEKQWMHVRFPP 178 G LK +++E +P K+ + IQL++ +GW H +++ + W+ + +PP Sbjct: 1195 GRGLKFATKLVEE---KPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPP 1243
>TPP2_HUMAN (P29144) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/52 (28%), Positives = 31/52 (59%) Frame = -1 Query: 333 GTALKVLNDMIQEDSEQPKKKLYDLKIQLIEEIGWAHVSAYEKQWMHVRFPP 178 G LK +++E +P K+ + IQL++ +GW H +++ + W+ + +PP Sbjct: 1195 GRGLKFATKLVEE---KPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPP 1243
>TPP2_MOUSE (Q64514) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1261 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/52 (28%), Positives = 31/52 (59%) Frame = -1 Query: 333 GTALKVLNDMIQEDSEQPKKKLYDLKIQLIEEIGWAHVSAYEKQWMHVRFPP 178 G LK +++E +P K+ + IQL++ +GW H +++ + W+ + +PP Sbjct: 1208 GRGLKFATKLVEE---KPTKENWKNCIQLMKLLGWTHCASFTENWLPIMYPP 1256
>DXS_WIGBR (Q8D357) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 626 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 120 STLSLLDATFVVSGIFHLTFQFLVW**GMQARPHWIL 10 S L +++ T + I++ F +LVW G QA PH I+ Sbjct: 56 SGLGVIELTVALHYIYNTPFDYLVWDVGHQAYPHKII 92
>DXS_VIBCH (Q9KTL3) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 626 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 120 STLSLLDATFVVSGIFHLTFQFLVW**GMQARPHWIL 10 S L ++ T + ++H F L+W G QA PH IL Sbjct: 52 SGLGTVELTVALHYVYHTPFDHLIWDVGHQAYPHKIL 88
>YNFF_ECOLI (P77783) Probable dimethyl sulfoxide reductase chain ynfF precursor| (EC 1.8.99.-) (DMSO reductase) Length = 807 Score = 25.0 bits (53), Expect(2) = 1.5 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 72 GRSLKRQMLHPTMTKY*TY*CLNKW*AHPTKREAEMGE 185 GRS++R+M HP KY P KR + GE Sbjct: 102 GRSIRRRMNHPDRLKY------------PMKRVGKRGE 127 Score = 23.5 bits (49), Expect(2) = 1.5 Identities = 9/26 (34%), Positives = 13/26 (50%) Frame = +2 Query: 14 IQCGLACMPYYHTKN*NVKWKIPETT 91 + CG C+ H K+ V W +TT Sbjct: 61 VNCGSRCLLRLHVKDDTVYWVESDTT 86
>Y042_METJA (Q60347) Hypothetical protein MJ0042| Length = 215 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -1 Query: 354 ERRCGRCGTALKVLNDMIQEDSEQPKKKLYDLKIQLIEE 238 E +C +CGT++ V+ M ++ + K D+KI IEE Sbjct: 25 EVKCPKCGTSIYVVKPMGEKMKNKRDKDFLDVKILEIEE 63
>TUSD_PASMU (Q9CL89) Sulfurtransferase tusD homolog (EC 2.8.1.-)| Length = 126 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 207 FHKPIHVPILSPQSAGSSDRITFSLVAQNPLESC 308 +H P+H+ + + Q G + +T S QN L SC Sbjct: 71 YHVPLHLCVAAAQRRGVVEPLTSSTTQQNNLASC 104
>CLF1_DEBHA (Q6BSP7) Pre-mRNA-splicing factor CLF1| Length = 714 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -1 Query: 330 TALKVLNDMI-QEDSEQPKKKLYDLKIQLIEEIG-WAHVSAYEKQWMHV 190 +A K+L I Q + +PK+KL+ I+L +++G W V ++W+ + Sbjct: 439 SARKILGRSIGQSSTVKPKRKLFKFYIELEQKLGEWDRVRKLYEKWLEL 487
>MSCL_LACPL (Q88X97) Large-conductance mechanosensitive channel| Length = 126 Score = 28.1 bits (61), Expect = 5.5 Identities = 9/30 (30%), Positives = 22/30 (73%) Frame = -1 Query: 324 LKVLNDMIQEDSEQPKKKLYDLKIQLIEEI 235 +K++N +++ + E+P+++ D+ Q +EEI Sbjct: 87 VKIINKVVKNEPEEPEEEEVDVSAQYLEEI 116
>PPZ2_YEAST (P33329) Serine/threonine-protein phosphatase PP-Z2 (EC 3.1.3.16)| Length = 709 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +3 Query: 138 NKW*AHPTKREAEMGESGHASTAFHKPIHVPILSPQSAGSSD 263 N+ +H + R++ G +G+ TA+ P+H P L S+ +D Sbjct: 247 NRSNSHASSRKSSFGSTGN--TAYSTPLHSPALRKMSSRDND 286
>DXS_YERPE (Q8ZC45) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 619 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -1 Query: 120 STLSLLDATFVVSGIFHLTFQFLVW**GMQARPHWIL 10 S L +++ T + +++ F L+W G QA PH IL Sbjct: 52 SGLGVVELTVALHYVYNTPFDHLIWDVGHQAYPHKIL 88
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = -1 Query: 321 KVLNDMIQEDSEQPKKKLYDLKIQLIEEIGWAHVSAYEKQWMHVRFPPSLPP 166 +V+ + +QE + + K+K +++L+E S + +WM + P LPP Sbjct: 200 EVMREELQETNSETKRKKITKRLKLLEAF---QQSGNKPEWMVMTVLPVLPP 248
>CPCF_SYNY3 (P72652) Phycocyanin alpha phycocyanobilin lyase cpcF| Length = 214 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Frame = -1 Query: 360 LRERRCGRCGTALKVLNDMIQEDSEQPKKKLYDLKIQLIEEIGW-------AHVSAYEKQ 202 L RR G + QE+ E +K +YD IQ+ E+ W A + KQ Sbjct: 117 LSVRRAAAKGLGFLRWQSLPQEEQETVQKAIYDTLIQVCEDPEWVVRYGAIAGLENLAKQ 176 Query: 201 WMHVRFP 181 H R P Sbjct: 177 AQHYRQP 183
>DXS_BLOFL (Q7VRH9) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 617 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 120 STLSLLDATFVVSGIFHLTFQFLVW**GMQARPHWIL 10 S L ++ T + +++ F L+W G QA PH IL Sbjct: 52 SGLGTIELTVALHYVYNTPFDHLIWDVGHQAYPHKIL 88
>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like| protein (EC 2.1.1.62) Length = 608 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/42 (35%), Positives = 27/42 (64%) Frame = -1 Query: 360 LRERRCGRCGTALKVLNDMIQEDSEQPKKKLYDLKIQLIEEI 235 LRE+ R +++L+D IQED PKK+L + +++ +E+ Sbjct: 17 LREKLEKRKKERIEILSD-IQEDLTNPKKELVEADLEVQKEV 57
>SYT_CLOAB (Q97GK4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 637 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 97 NICRFRDLPFDISILGMVIRHASEAALDSL 8 NI +R+LP ++ +G+V RH AL L Sbjct: 343 NIHSYRELPIKLAEIGLVHRHEKSGALHGL 372
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/50 (28%), Positives = 27/50 (54%) Frame = -1 Query: 315 LNDMIQEDSEQPKKKLYDLKIQLIEEIGWAHVSAYEKQWMHVRFPPSLPP 166 L + + E + + K+K +++L+E VS + +WM ++ P LPP Sbjct: 201 LREELPETNSETKRKKISKRLKLLEAF---QVSNNKPEWMILKVLPILPP 247
>CD45_MOUSE (P06800) Leukocyte common antigen precursor (EC 3.1.3.48) (L-CA)| (Lymphocyte common antigen Ly-5) (CD45 antigen) (T200) Length = 1291 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 9/46 (19%) Frame = +3 Query: 186 SGHASTAFHKPIH---VPILSPQ------SAGSSDRITFSLVAQNP 296 +G + T +H + +P LSPQ SAG +D TFS A NP Sbjct: 64 NGSSETTYHPGVLSTLLPHLSPQPDSQTPSAGGADTQTFSSQADNP 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,585,805 Number of Sequences: 219361 Number of extensions: 1072744 Number of successful extensions: 2731 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2657 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2731 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
