ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-ass... 26 1.7
2KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-ass... 26 2.1

>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein|
           1.8) (Keratin-associated protein 1.9)
          Length = 177

 Score = 25.8 bits (55), Expect(2) = 1.7
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 162 CQGAGLCINKYALLKCKPACCDILESSAANFCTVRTTLWFCAYTCVDSSPVVSC 1
           C+  G C+    ++ C P  C  L  + A+ C       +C  +C    PV  C
Sbjct: 123 CRVEGTCLPPCCVVSCTPPTCCQLHHAEASCCRPS----YCGQSC--CRPVCCC 170



 Score = 23.9 bits (50), Expect(2) = 1.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 293 CRHNLS*TKSCGMRASAG*LINSGQQGSGCFIAT 192
           C+ +   T SCG     G  I  GQ+GS   ++T
Sbjct: 81  CQPSCCQTSSCGTGCGIGGGIGYGQEGSSGAVST 114



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>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein|
           1.1) (High sulfur keratin-associated protein 1.1)
           (Keratin-associated protein 1.6) (Keratin-associated
           protein 1.7)
          Length = 177

 Score = 25.8 bits (55), Expect(2) = 2.1
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -1

Query: 162 CQGAGLCINKYALLKCKPACCDILESSAANFCTVRTTLWFCAYTCVDSSPVVSC 1
           C+  G C+    ++ C P  C  L  + A+ C       +C  +C    PV  C
Sbjct: 123 CRVEGTCLPPCCVVSCTPPSCCQLHHAEASCCRPS----YCGQSC--CRPVCCC 170



 Score = 23.5 bits (49), Expect(2) = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 293 CRHNLS*TKSCGMRASAG*LINSGQQGSGCFIAT 192
           C+ +   T SCG     G  I  GQ+GS   ++T
Sbjct: 81  CQPSCYQTSSCGTGCGIGGGIGYGQEGSSGAVST 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,710,487
Number of Sequences: 219361
Number of extensions: 1319933
Number of successful extensions: 2893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2892
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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