ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... 29 3.9
2MUTS_TREPA (O83348) DNA mismatch repair protein mutS 28 6.7
3AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-gl... 28 8.8

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 203  EESVAA*VRQFSSVKFGSHILSPFVFPFFRTLG 105
            EE   A  + F +++   H   P +FPFF+T+G
Sbjct: 1212 EEQSTAEYKNFQTLRVLLHSFMPSIFPFFQTIG 1244



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>MUTS_TREPA (O83348) DNA mismatch repair protein mutS|
          Length = 900

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 373 VYSGY*PYAQMHCVSGSFIPNMATSSSHEQGI 278
           +  G  P  ++H  SG F+PN  T SS E  +
Sbjct: 586 ITGGRHPVVELHLPSGEFVPNDLTLSSSEHAV 617



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>AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 685

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -3

Query: 393 FWFSFTQYTQDTDHMRKCIASQARLYLIWLRVQATSKESVTTKHIVECIMNFLYNKCWN 217
           FW +F     +++HM+K      ++  +W +VQ +  E V  K + E       +  W+
Sbjct: 314 FWRNFLAKYDESNHMQK------KMLYVWKKVQDSPNEEVKEKAMEEVFQGQANDAYWH 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,236,272
Number of Sequences: 219361
Number of extensions: 1005175
Number of successful extensions: 2039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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