Clone Name | rbastl46h05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... | 29 | 3.9 | 2 | MUTS_TREPA (O83348) DNA mismatch repair protein mutS | 28 | 6.7 | 3 | AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-gl... | 28 | 8.8 |
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>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 203 EESVAA*VRQFSSVKFGSHILSPFVFPFFRTLG 105 EE A + F +++ H P +FPFF+T+G Sbjct: 1212 EEQSTAEYKNFQTLRVLLHSFMPSIFPFFQTIG 1244
>MUTS_TREPA (O83348) DNA mismatch repair protein mutS| Length = 900 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -2 Query: 373 VYSGY*PYAQMHCVSGSFIPNMATSSSHEQGI 278 + G P ++H SG F+PN T SS E + Sbjct: 586 ITGGRHPVVELHLPSGEFVPNDLTLSSSEHAV 617
>AMY1_DICTH (P09961) Alpha-amylase 1 (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 685 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/59 (23%), Positives = 27/59 (45%) Frame = -3 Query: 393 FWFSFTQYTQDTDHMRKCIASQARLYLIWLRVQATSKESVTTKHIVECIMNFLYNKCWN 217 FW +F +++HM+K ++ +W +VQ + E V K + E + W+ Sbjct: 314 FWRNFLAKYDESNHMQK------KMLYVWKKVQDSPNEEVKEKAMEEVFQGQANDAYWH 366 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,236,272 Number of Sequences: 219361 Number of extensions: 1005175 Number of successful extensions: 2039 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2039 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)