ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
3dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
4dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 70 6e-09
6gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence 54 4e-04
7gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence 54 4e-04
8gb|AY103815.1| Zea mays PCO096873 mRNA sequence 54 4e-04
9gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.4
10gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 42 1.4
11gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 5.5
12gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 5.5
13emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chro... 40 5.5
14emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chr... 40 5.5
15emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 5.5
16dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.5
17emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 5.5
18emb|CT010516.6| Mouse DNA sequence from clone RP23-276H24 on chr... 40 5.5 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                            
Query: 339      ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 398
                ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 19193103 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 19193044

                               
Query: 399      gtttgctcctgcaca 413
                |||||||||||||||
Sbjct: 19193043 gtttgctcctgcaca 19193029



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 254      gattattcaccaaatggctg 273
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 398
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3333 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3274

                           
Query: 399  gtttgctcctgcaca 413
            |||||||||||||||
Sbjct: 3273 gtttgctcctgcaca 3259



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  gattattcaccaaatggctg 273
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 398
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3379 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3320

                           
Query: 399  gtttgctcctgcaca 413
            |||||||||||||||
Sbjct: 3319 gtttgctcctgcaca 3305



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  gattattcaccaaatggctg 273
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
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>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 398
            ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 1314 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 1255

                           
Query: 399  gtttgctcctgcaca 413
            |||||||||||||||
Sbjct: 1254 gtttgctcctgcaca 1240



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  gattattcaccaaatggctg 273
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                          
Query: 339    ctacacgttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 398
              ||||| ||||| || || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 126625 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 126566

                             
Query: 399    gtttgctcctgcaca 413
              |||||||||||||||
Sbjct: 126565 gtttgctcctgcaca 126551



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    gattattcaccaaatggctg 273
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688
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>gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence
          Length = 703

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 346 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 405
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 468 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 409

                  
Query: 406 cctgcac 412
           |||||||
Sbjct: 408 cctgcac 402
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>gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence
          Length = 674

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                       
Query: 346 ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 405
           ||||||||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 470 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 411

                  
Query: 406 cctgcac 412
           |||||||
Sbjct: 410 cctgcac 404
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>gb|AY103815.1| Zea mays PCO096873 mRNA sequence
          Length = 1431

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  ttcagaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 405
            ||||||| ||| | |||| ||||||  ||||||||||||||| ||| ||||| || ||||
Sbjct: 1130 ttcagaaagggtagttgagggggtcgcgctgcagcgccttctgcaccagctccgtctgct 1071

                   
Query: 406  cctgcac 412
            |||||||
Sbjct: 1070 cctgcac 1064
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>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 225 taacgcgcgcggtaccacaca 245
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   acaaaaggatgtagacaaaag 172
             |||||||||||||||||||||
Sbjct: 37480 acaaaaggatgtagacaaaag 37500
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     cagcagtatggatgtaccgt 51
              ||||||||||||||||||||
Sbjct: 938827 cagcagtatggatgtaccgt 938846
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>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    tgggtacagttctttattgg 97
             ||||||||||||||||||||
Sbjct: 61035 tgggtacagttctttattgg 61016
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>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
              pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    tcatggctatgcaaagaacc 339
              ||||||||||||||||||||
Sbjct: 122766 tcatggctatgcaaagaacc 122747
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>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete
             sequence
          Length = 101598

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   accaaatggctgtaatttag 281
             ||||||||||||||||||||
Sbjct: 78854 accaaatggctgtaatttag 78835
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aacaaaattatgcactgaaa 203
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    aggcgatgacgggaacaaaa 190
              ||||||||||||||||||||
Sbjct: 431604 aggcgatgacgggaacaaaa 431623
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>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   aacaaaattatgcactgaaa 203
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
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>emb|CT010516.6| Mouse DNA sequence from clone RP23-276H24 on chromosome 14, complete
             sequence
          Length = 194815

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    gaatcatatgcaaggcacagcagt 38
             ||||||||||||| ||||||||||
Sbjct: 45930 gaatcatatgcaatgcacagcagt 45907


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,163,613
Number of Sequences: 3902068
Number of extensions: 4163613
Number of successful extensions: 64726
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64660
Number of HSP's gapped (non-prelim): 66
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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