>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific processing
            protease 8) (Deubiquitinating enzyme 8) (hUBPy)
          Length = 1118

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +3

Query: 45   QYKSSRICIT-HKRNTTISQ---ITQPIRSTNKCTYMMKLLLFS 164
            Q+KS+  C+T HK++ T      ++ P+ ST+KCT    L LFS
Sbjct: 929  QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 972

>RS6_MYCPN (P75543) 30S ribosomal protein S6|
          Length = 215

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
 Frame = -1

Query: 459 QDNNPRKRHSLPITNGKNETSPRMQRSSS------------QAQQNVKSSVAVPHNPSDK 316
           ++NNP +   +P+T+G   T PR+ R+              Q   N  S  A P+ P  K
Sbjct: 121 RENNP-ENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFK 179

Query: 315 RWN 307
           R+N
Sbjct: 180 RFN 182

>ENDR_PAEPO (P27871) Probable HTH-type transcriptional regulator endR|
          Length = 340

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 71  YTQKKYHYQSNNTTNKINQQM----YIYDEAAALLHQ 169
           + QK+Y+Y S NT  KI Q +    YI +E A  L Q
Sbjct: 22  FLQKRYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQ 58

>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing
            protease 8) (Deubiquitinating enzyme 8) (mUBPy)
          Length = 1080

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 45   QYKSSRICITHKRNTTISQ----ITQPIRSTNKCTYMMKLLLFS 164
            Q+KS+  C+T +R +   +    ++ P+ ST+KCT    L LFS
Sbjct: 891  QFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 934

>EAF7_YEAST (P53911) Chromatin modification-related protein EAF7|
           (ESA1-associated factor 7)
          Length = 425

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 465 DVQDNNP----RKRHSLPITNGKNETSPRMQRSSSQAQQNVKSSVAVPHNPSDKR 313
           D +D N     R RHS    N  NETSP+ +R  + +++N   +  V     +K+
Sbjct: 371 DSKDKNEPLAKRTRHSSSTGNTSNETSPKRKRRKAGSRKNSPPATRVSSRLRNKK 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,027,536
Number of Sequences: 219361
Number of extensions: 1292688
Number of successful extensions: 3544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3543
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)