ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 71 1e-12
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 71 1e-12
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 61 1e-09
4FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) ... 31 1.6
5SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-) (... 30 2.0
6UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... 30 3.5
7XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD 30 3.5

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 38/52 (73%), Positives = 38/52 (73%)
 Frame = -2

Query: 444  HKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 289
            HKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 1000 HKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 38/52 (73%), Positives = 38/52 (73%)
 Frame = -2

Query: 444  HKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 289
            HKERLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 1000 HKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 31/52 (59%), Positives = 36/52 (69%)
 Frame = -2

Query: 444  HKERLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 289
            HK+RL +KVVD+AREVAK++VP YRRHL              DIPLVSVYFR
Sbjct: 1002 HKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>FUT4_BOVIN (Q8HZR3) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV)
           (Fuc-TIV)
          Length = 398

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 378 RAPPSWPPPWQHQLP 422
           + PP WPPPW  Q+P
Sbjct: 112 KGPPDWPPPWGVQMP 126



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>SENP7_HUMAN (Q9BQF6) Sentrin-specific protease 7 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific
           protease 2)
          Length = 984

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +1

Query: 196 QLTVTNATHDLSVDQA*PTTRSCEHR*SASSAEVDRHKRDVDIVVIVILTGHHDVEMTPV 375
           +LT++NAT   S               + S+ E   +   +DIV I  L    + E+  +
Sbjct: 309 ELTLSNATKSAS---------------AGSTTETVEYSNSIDIVGISSLVEKDENELNTI 353

Query: 376 RGHLHLGHLPGNINYLSVKPFLV 444
              +  GH  GN + +S +P +V
Sbjct: 354 EKPILRGHNEGNQSLISAEPIVV 376



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>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 313 DVDIVVIVILTGHHDVEMTPVRGHLHLG 396
           D+DI+ + I  GH  V +  VRG  HLG
Sbjct: 268 DIDILAVAIKGGHACVNLAMVRGGRHLG 295



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>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD|
          Length = 311

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 319 DIVVIVILTGHHDVEMTPVRGHLHLGHL 402
           D+ VI  L GH D+  T +  HLH  HL
Sbjct: 267 DLRVIQELLGHADISTTQIYTHLHTNHL 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,333,158
Number of Sequences: 219361
Number of extensions: 1088873
Number of successful extensions: 2800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2800
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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