ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46g11 |
|---|---|
| Clone Library Name | barley_pub |
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/29 (68%), Positives = 23/29 (79%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPEYHEE 286 EL TD+YI TS +EG VILKKNP+Y EE Sbjct: 963 ELETDEYISYTSHIEGVVILKKNPDYREE 991
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/26 (65%), Positives = 23/26 (88%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPEY 295 ELAT++++P+T LEGFVIL+KNP Y Sbjct: 881 ELATEEFLPVTPILEGFVILRKNPNY 906
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/26 (65%), Positives = 23/26 (88%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPEY 295 ELAT++++P+T LEGFVIL+KNP Y Sbjct: 881 ELATEEFLPVTPILEGFVILRKNPNY 906
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/29 (62%), Positives = 23/29 (79%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPEYHEE 286 EL D+YI L+STLEG VIL+KNP++ E Sbjct: 854 ELEDDQYISLSSTLEGLVILRKNPDWEGE 882
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPEYHEE 286 EL D+YI T+ +EG VILKKNP + EE Sbjct: 954 ELENDEYISYTNNIEGVVILKKNPNFQEE 982
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 35.4 bits (80), Expect = 0.034 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = -2 Query: 372 ELATDKYIPLTSTLEGFVILKKNPE 298 ELAT+ Y PLTS LEG VILKKN E Sbjct: 862 ELATEAYTPLTS-LEGIVILKKNTE 885
>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 634 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 119 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLIC 3 CN +S LV D TH+G +GV SF +L+C Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVC 424
>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5| Length = 72 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 203 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRITKPS 331 DD Y C G ++L GG+ + S + G+ +R +PS Sbjct: 19 DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61
>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 180 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 302 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 688 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 180 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 302 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)| Length = 744 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 275 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 165 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264
>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)| Length = 750 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 275 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 165 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264
>DYHC_YEAST (P36022) Dynein heavy chain, cytosolic (DYHC)| Length = 4092 Score = 28.1 bits (61), Expect = 5.4 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%) Frame = -1 Query: 340 LHVGGLCNSEEEPG-IPRGVRETP*ALI*CKFLEFPS-MACSEV-----KVVVTEDPSLC 182 +H+ G CN +PG IP R T A I +L +PS + S++ K + P Sbjct: 2529 IHIVGACNPPTDPGRIPMSERFTRHAAI--LYLGYPSGKSLSQIYEIYYKAIFKLVPEFR 2586 Query: 181 SYTSAFAGGS 152 SYT FA S Sbjct: 2587 SYTEPFARAS 2596
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = +3 Query: 156 PPANAEV*EHSEGSSVTTTFTSEHAML-----GNSKNLHQIKA*GVSLTPRGIPGSSSEL 320 P ++A HS GS+ T S HA +S + + LTPR P SSS Sbjct: 1038 PRSSASSHGHSVGSTSAPTSPSVHASSQVIKRSSSPARSEASQGALDLTPRAAPTSSSSS 1097 Query: 321 QSP 329 +SP Sbjct: 1098 RSP 1100
>DNAK_PSESG (Q9WWG9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/75 (22%), Positives = 31/75 (41%) Frame = +3 Query: 78 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 257 P+ G + ++TAL+ FL P+ ++ E + E G +K+L Sbjct: 396 PLTLGIEAMGGVMTALIKKTPRFLPRNPSVLTADDNQENAVAIHVLQGERKQAGQNKSLG 455 Query: 258 QIKA*GVSLTPRGIP 302 + + PRG+P Sbjct: 456 KFDLAEIPPAPRGVP 470
>DNAK_CORJK (Q4JXX6) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 78 PVHSGNQTRLQLVTALVDGIKMFLDEPPANAEV*EHSEGSSVTTTFTSEHAMLGNSKNLH 257 P+ G +T+ ++T L++ + E S+ S F E M ++K L Sbjct: 370 PLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDSQPSVQIQVFQGEREMAAHNKLLG 429 Query: 258 QIKA*GVSLTPRGIP 302 + G++ PRG+P Sbjct: 430 SFELAGIAPAPRGVP 444
>LPQT_MYCLE (Q9CD47) Putative lipoprotein lpqT precursor| Length = 218 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 198 SVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIPGSSSELQSPPTW 338 S TTT T+ + + L I G + P +PG + + +PP W Sbjct: 38 SSTTTTTTPDKPIPLPQYLESIGVTGQQVAPSSLPGLTVSIPTPPGW 84
>DYIN_DROME (Q24246) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic| dynein intermediate chain) (Protein short wing) Length = 663 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 364 D*QVHSPDLHVGGLCNSEEEPGIPRGV 284 D H P+L VG N+EE P P GV Sbjct: 320 DWSTHFPELVVGSYHNNEESPNEPDGV 346
>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)| Length = 77 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -3 Query: 107 QSCLVARMDRHATCTHSGGHVG 42 Q +A DRH TC H G H G Sbjct: 26 QKXFLAACDRHDTCYHCGKHFG 47
>DNAK_RHILO (Q98DD1) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 180 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 302 E S+ + F E M ++K L Q G+ PRG+P Sbjct: 425 EDSQSAVTIRVFQGEREMAADNKALGQFDLVGIPPAPRGVP 465
>DNAK_MYCCT (Q2SSB0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 222 EHAMLGNSKNLHQIKA*GVSLTPRGIP 302 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>DNAK_MYCCA (P0C177) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 591 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 222 EHAMLGNSKNLHQIKA*GVSLTPRGIP 302 E AM ++K+L Q + G+ PRGIP Sbjct: 416 ERAMAADNKSLGQFQLTGIQPAPRGIP 442
>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20| antigen-like 5) (Fragment) Length = 287 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +3 Query: 39 NSYMSTRVGTSGMPVHSGNQTRLQLVTALVDGIKMFLDEPPA 164 NSY MP++ NQ ++ +++ + G+ + EPPA Sbjct: 56 NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,485,373 Number of Sequences: 219361 Number of extensions: 1340918 Number of successful extensions: 3858 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3857 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
