Clone Name | rbastl46g11 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3121 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2716
>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA Length = 3169 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2570695
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_C03 Length = 103297 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 49478
>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full insert sequence Length = 3120 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2715
>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full insert sequence Length = 3169 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2723
>gb|AY104160.1| Zea mays PCO080306 mRNA sequence Length = 1460 Score = 71.9 bits (36), Expect = 1e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 283 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 330 ||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcagaatcacaaagccctc 997
>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence Length = 1023 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 283 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 330 |||||| || ||||| |||||||||||||||| ||| ||||||||||| Sbjct: 595 tcactcttcatggtactccgggttcttcttcaaaatcacaaagccctc 548
>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence Length = 202294 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 134 aataaaaatgtttttggatgaa 155 |||||||||||||||||||||| Sbjct: 56757 aataaaaatgtttttggatgaa 56736
>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase AT1G66980 mRNA, complete cds Length = 3512 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 taaaaatgtttttggatgaa 155 |||||||||||||||||||| Sbjct: 3459 taaaaatgtttttggatgaa 3440
>ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), mRNA Length = 3968 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family member 17 (LOC456592), mRNA Length = 2922 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 560 agccctccaacgtggaggtc 579
>gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA, complete cds Length = 3968 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 taaaaatgtttttggatgaa 155 |||||||||||||||||||| Sbjct: 27065 taaaaatgtttttggatgaa 27084
>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5' end of the KIF17 gene for kinesin family member 17, three novel genes, the 3' end of gene HP1-BP74 and two CpG islands, complete sequence Length = 85781 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 16384 agccctccaacgtggaggtc 16365
>gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA clone MGC:70843 IMAGE:6171598), complete cds Length = 3750 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 1747 agccctccaacgtggaggtc 1766
>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1, complete sequence Length = 121187 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ctccaaaaacttgcatcaga 261 |||||||||||||||||||| Sbjct: 30564 ctccaaaaacttgcatcaga 30545
>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence Length = 162949 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 atgccgaggtgtaagagcat 185 |||||||||||||||||||| Sbjct: 107859 atgccgaggtgtaagagcat 107878
>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence Length = 151297 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tccctcactcctcgtggtat 298 |||||||||||||||||||| Sbjct: 66748 tccctcactcctcgtggtat 66729
>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence Length = 184579 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 atgccgaggtgtaagagcat 185 |||||||||||||||||||| Sbjct: 65374 atgccgaggtgtaagagcat 65393
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12, complete sequence Length = 177468 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 taaaaatgtttttggatgaa 155 |||||||||||||||||||| Sbjct: 161862 taaaaatgtttttggatgaa 161843
>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1, complete sequence Length = 130339 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ctccaaaaacttgcatcaga 261 |||||||||||||||||||| Sbjct: 100541 ctccaaaaacttgcatcaga 100560
>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence Length = 131867 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tttttggatgaaccaccagc 163 |||||||||||||||||||| Sbjct: 64488 tttttggatgaaccaccagc 64507
>dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds Length = 3570 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 1585 agccctccaacgtggaggtc 1604
>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete sequence Length = 151493 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aataaaaatgtttttggatg 153 |||||||||||||||||||| Sbjct: 61609 aataaaaatgtttttggatg 61590
>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete sequence Length = 150434 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 agccctccaacgtggaggtc 343 |||||||||||||||||||| Sbjct: 39457 agccctccaacgtggaggtc 39438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,265,777 Number of Sequences: 3902068 Number of extensions: 3265777 Number of successful extensions: 59819 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59766 Number of HSP's gapped (non-prelim): 53 length of query: 373 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 351 effective length of database: 17,147,199,772 effective search space: 6018667119972 effective search space used: 6018667119972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)