ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 1... 42 0.13
2gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, co... 38 2.0
3ref|XM_800960.1| Trypanosoma cruzi strain CL Brener thimet oligo... 36 7.7
4ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligo... 36 7.7
5emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in... 36 7.7
6emb|AL160275.14| Human DNA sequence from clone RP11-402G3 on chr... 36 7.7
7emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chr... 36 7.7
8gb|AC010238.6| Homo sapiens chromosome 5 clone CTC-349C3, comple... 36 7.7
9emb|BX927385.15| Zebrafish DNA sequence from clone DKEY-76P7 in ... 36 7.7

>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the
            complete genome
          Length = 11901

 Score = 42.1 bits (21), Expect = 0.13
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 20   gttttttgtcaaaaaaggcct 40
            |||||||||||||||||||||
Sbjct: 4932 gttttttgtcaaaaaaggcct 4912



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>gb|AC025800.10| Homo sapiens chromosome 8, clone RP11-600N23, complete sequence
          Length = 185359

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     ttgtcaaaaaaggcctgat 43
              |||||||||||||||||||
Sbjct: 127964 ttgtcaaaaaaggcctgat 127982



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>ref|XM_800960.1| Trypanosoma cruzi strain CL Brener thimet oligopeptidase
            (Tc00.1047053506411.10) partial mRNA
          Length = 2061

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tgtcaaaaaaggcctgat 43
            ||||||||||||||||||
Sbjct: 1129 tgtcaaaaaaggcctgat 1112



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>ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligopeptidase
            (Tc00.1047053511237.10) partial mRNA
          Length = 2061

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   tgtcaaaaaaggcctgat 43
            ||||||||||||||||||
Sbjct: 1129 tgtcaaaaaaggcctgat 1112



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>emb|CR450809.6| Zebrafish DNA sequence from clone CH211-195I6 in linkage group 2,
             complete sequence
          Length = 206746

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    tcaaaaaaggcctgatca 45
             ||||||||||||||||||
Sbjct: 97664 tcaaaaaaggcctgatca 97647



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>emb|AL160275.14| Human DNA sequence from clone RP11-402G3 on chromosome 9 Contains the
              ATP6V1G1 gene for ATPase, H+ transporting, lysosomal 13kDa,
              V1 subunit G isoform 1 (ATP6G, ATP6GL), a novel gene
              (DKFZp547P234), a novel gene, a pseudogene similar to part
              of ribosomal protein L7 (RPL7), a pseudogene similar to
              part of ARP3 actin-related protein 3 homolog (yeast)
              (ACTR3) and three CpG islands, complete sequence
          Length = 189709

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 30     aaaaaaggcctgatcatggaagggag 55
              |||||| ||||| |||||||||||||
Sbjct: 135958 aaaaaaagcctgttcatggaagggag 135933



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>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete
             sequence
          Length = 201815

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 24    tttgtcaaaaaaggcctg 41
             ||||||||||||||||||
Sbjct: 18808 tttgtcaaaaaaggcctg 18825



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>gb|AC010238.6| Homo sapiens chromosome 5 clone CTC-349C3, complete sequence
          Length = 167022

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 36    ggcctgatcatggaaggg 53
             ||||||||||||||||||
Sbjct: 24950 ggcctgatcatggaaggg 24967



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>emb|BX927385.15| Zebrafish DNA sequence from clone DKEY-76P7 in linkage group 10,
            complete sequence
          Length = 243665

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 21   ttttttgtcaaaaaaggc 38
            ||||||||||||||||||
Sbjct: 8249 ttttttgtcaaaaaaggc 8232


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 425,082
Number of Sequences: 3902068
Number of extensions: 425082
Number of successful extensions: 114480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114465
Number of HSP's gapped (non-prelim): 15
length of query: 55
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 35
effective length of database: 17,155,003,908
effective search space: 600425136780
effective search space used: 600425136780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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