ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y034_RICPR (Q9ZEB1) Hypothetical protein RP034 29 6.0
2AARD_PROST (Q52402) Transport ATP-binding protein aarD 28 7.9

>Y034_RICPR (Q9ZEB1) Hypothetical protein RP034|
          Length = 440

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 82  MVWSHRILNVSSDNNFKLIRETKTINTST*LFRAVYVARINRVLKPSSHKYND*NANREL 261
           +++  R+LN SS NN   IR+ KT      +  A++   +   L P++  Y   N N E+
Sbjct: 297 LIYKFRLLNYSSKNNLIFIRKFKTYKYMALMLEAMF-KDMQDNLSPNAEVYK--NKNPEI 353

Query: 262 KKS 270
           +++
Sbjct: 354 EEA 356



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>AARD_PROST (Q52402) Transport ATP-binding protein aarD|
          Length = 588

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 302 LEMLNPLDMKRLFFNSLFAFQSLYLCDDGFRTRLMRATYTA-LNNHVLVFIVFVSL 138
           L+ L  LD  RLFF      Q +    + FR+R M     A L++ VL F   +S+
Sbjct: 206 LDRLRGLDTLRLFFREKAEVQQIRESTEDFRSRTMEVLRMAFLSSGVLEFFASISI 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,961,475
Number of Sequences: 219361
Number of extensions: 1134719
Number of successful extensions: 2701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2700
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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