ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSH1_YEAST (P38287) Mannosyl phosphorylinositol ceramide synthas... 29 5.6
2VL1_BPV3 (P50805) Major capsid protein L1 29 7.3
3ABD1_YEAST (P32783) mRNA (guanine-N(7)-)-methyltransferase (EC 2... 29 7.3
4ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenyl... 28 9.6
5ZN513_HUMAN (Q8N8E2) Zinc finger protein 513 28 9.6
6ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Aden... 28 9.6

>CSH1_YEAST (P38287) Mannosyl phosphorylinositol ceramide synthase CSH1 (EC|
           2.-.-.-) (CSG1/SUR1 homolog 1)
          Length = 376

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 301 H*GNTGWLQVLNNHVFFLCLLGFIFSFII 215
           H G+  +++ L NH+    + GFIF F I
Sbjct: 260 HTGDANFMKTLENHILSCVVTGFIFGFFI 288



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>VL1_BPV3 (P50805) Major capsid protein L1|
          Length = 510

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
 Frame = -3

Query: 359 DSYTSPSFKVYLHHCGVGLPLRQHWMASSFEQSCILSLPFRVYIFFH---YRCVELYRFL 189
           D+YT+  FK YL H        + W  S   Q CI+ L        +    R +E +   
Sbjct: 358 DTYTAAEFKHYLRHV-------EEWEVSLVLQLCIVDLTPEALAHINGMDPRIIESWNLG 410

Query: 188 ILSVIT*EEKLAGYM---AVH*LPPSDVNALEDTYQMDNLWNV 69
            +      E    Y+   A    P  D  A ED Y     W+V
Sbjct: 411 FIHAPNNIEDQYRYLQSIATRCPPKEDAAATEDPYAKYTFWDV 453



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>ABD1_YEAST (P32783) mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56)|
          Length = 436

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 413 SPMI*TGSMDSCKKYNWIDSYTSPSFKVYLHHCGVGLPLRQHWMA 279
           SP+I   + ++  KY  ID YT P   V    CG G  LR++  A
Sbjct: 141 SPIIKLRNFNNAIKYMLIDKYTKPGDVVLELGCGKGGDLRKYGAA 185



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>ADCY5_RAT (Q04400) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
          Length = 1262

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 356 SYTSPSFKVYLHHCGVGLPLRQHWMAS-SFEQSCILSLPFRVYIFFHYRCVELY 198
           +Y + +  V+L  C V + +  H +   SF  SC L L   V+I   Y CV+L+
Sbjct: 764 AYVACASLVFLFICFVQITIVPHSLFMLSFYLSCFLLLALVVFISVIYACVKLF 817



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>ZN513_HUMAN (Q8N8E2) Zinc finger protein 513|
          Length = 479

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
 Frame = +2

Query: 83  CPFGMYPPMHL--HQKVATNGQPYNLPISXXXXXXXXXXXXXXXHSDN-ERKYKP*KAKK 253
           CPF  + P HL  H K  +  +P+                    H DN +R  +    +K
Sbjct: 303 CPFATHYPNHLARHMKTHSGEKPFRC----------ARCPYASAHLDNLKRHQRVHTGEK 352

Query: 254 EYMIVQNLKPSSVASMANLHRSGE----DTL*RMGLCNY 358
            Y     L P +  ++ANL R G     D   R  LCNY
Sbjct: 353 PYKC--PLCPYACGNLANLKRHGRIHSGDKPFRCSLCNY 389



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>ADCY5_RABIT (P40144) Adenylate cyclase type 5 (EC 4.6.1.1) (Adenylate cyclase|
           type V) (ATP pyrophosphate-lyase 5) (Adenylyl cyclase 5)
          Length = 1264

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 356 SYTSPSFKVYLHHCGVGLPLRQHWMAS-SFEQSCILSLPFRVYIFFHYRCVELY 198
           +Y + +  V+L  C V + +  H M   SF  +C L L   V++   Y CV+L+
Sbjct: 766 AYVACASLVFLFICCVQITIVPHSMFMLSFYLACFLLLTLVVFVSMIYSCVKLF 819


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,288,441
Number of Sequences: 219361
Number of extensions: 1374739
Number of successful extensions: 3395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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