ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475386.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
2gb|AC121361.3| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
4dbj|AK065821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
5gb|AY821693.1| Australopyrum velutinum beta amylase gene, partia... 48 0.027
6gb|AF308474.1|AF308474 Hordeum vulgare asparaginase gene, comple... 48 0.027
7gb|AY821692.1| Australopyrum retrofractum beta amylase gene, par... 46 0.11
8gb|AY133250.1|AY133250S1 Hordeum vulgare subsp. vulgare starch s... 46 0.11
9emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 46 0.11
10gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 46 0.11
11gb|AF460219.1| Hordeum vulgare subsp. vulgare nuclear transcript... 46 0.11
12gb|AC102039.8| Mus musculus chromosome 5, clone RP23-262L7, comp... 44 0.42
13emb|AL157776.15| Human DNA sequence from clone RP11-68J15 on chr... 44 0.42
14gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 44 0.42
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
16dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
17gb|AY109063.1| Zea mays PCO138300 mRNA sequence 44 0.42
18gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, com... 44 0.42
19gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genom... 42 1.6
20gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 42 1.6
21gb|AC125259.8| Mus musculus chromosome 19, clone RP24-202G16, co... 42 1.6
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
23emb|CR626934.1| Triticum aestivum 42 1.6
24gb|AC148609.23| Medicago truncatula clone mth2-58e8, complete se... 42 1.6
25gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) ... 42 1.6
26dbj|AK037052.1| Mus musculus adult female vagina cDNA, RIKEN ful... 42 1.6
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
28dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
29gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosom... 42 1.6
30dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
31gb|AC016791.23| Mus musculus chromosome 19, clone RP23-187B17, c... 42 1.6
32gb|DQ154923.1| Hordeum vulgare RAB7 (RAB7) gene, exons 1 through... 42 1.6
33gb|BC021451.1| Mus musculus armadillo repeat containing 1, mRNA ... 40 6.5
34gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 40 6.5
35gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 6.5
36gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece 40 6.5
37ref|XM_458709.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.5
38gb|AC147992.3| Mus musculus BAC clone RP24-384K8 from chromosome... 40 6.5
39gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 ma... 40 6.5
40ref|XM_909095.2| PREDICTED: Mus musculus similar to armadillo re... 40 6.5
41gb|AC124432.5| Mus musculus BAC clone RP24-243L15 from chromosom... 40 6.5
42gb|AC132419.3| Mus musculus BAC clone RP23-252B17 from chromosom... 40 6.5
43gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome... 40 6.5
44gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosom... 40 6.5
45ref|XM_649809.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.5
46ref|XM_732401.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.5
47ref|XM_728202.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 6.5
48ref|XM_662156.1| Cryptosporidium hominis TU502 hypothetical prot... 40 6.5
49gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Ho... 40 6.5
50emb|AL138893.5| Human DNA sequence from clone RP11-159L16 on chr... 40 6.5
51emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS... 40 6.5
52gb|AC073365.14| Homo sapiens 3 BAC RP11-479M14 (Roswell Park Can... 40 6.5
53gb|AC117473.3| Homo sapiens 3 BAC RP11-730J6 (Roswell Park Cance... 40 6.5
54gb|AC098687.3| Bos taurus clone rp42-194o5, complete sequence 40 6.5
55gb|AC118469.2| Homo sapiens chromosome 1 clone RP11-366L18, comp... 40 6.5
56gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 40 6.5
57gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, com... 40 6.5
58gb|AC020734.6| Homo sapiens BAC clone RP11-665I14 from 4, comple... 40 6.5
59gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, gen... 40 6.5
60gb|AC161057.2| Mus musculus BAC clone RP23-248K11 from chromosom... 40 6.5
61gb|AE008686.1|AE008686 Mus musculus T-cell receptor alpha/delta ... 40 6.5
62ref|XM_626512.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 6.5
63dbj|AK014031.1| Mus musculus 13 days embryo head cDNA, RIKEN ful... 40 6.5
64gb|AC026799.4| Homo sapiens chromosome 5 clone CTD-2366H10, comp... 40 6.5
65dbj|AK034483.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 6.5
66emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B r... 40 6.5
67gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete se... 40 6.5
68dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
69gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q2... 40 6.5
70ref|XM_342369.2| PREDICTED: Rattus norvegicus similar to very la... 40 6.5
71gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence 40 6.5
72gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M... 40 6.5
73gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 40 6.5
74gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 6.5
75dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
76gb|AC155888.2| Medicago truncatula chromosome 7 BAC clone mth2-3... 40 6.5
77ref|NM_028840.2| Mus musculus armadillo repeat containing 1 (Arm... 40 6.5
78emb|AL110498.1|CEY64G10A Caenorhabditis elegans YAC Y64G10A, com... 40 6.5
79gb|M64239.1|MUSTCRA Mouse T-cell receptor alpha/delta chain locus 40 6.5 
>ref|XM_475386.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2493

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 358  tcaatccaattgtatttcttgcaactgtccatgctgcccgttcatatcatt 408
            |||||||| || |||||||||||||||| |||||||||| |||||||||||
Sbjct: 2493 tcaatccagttttatttcttgcaactgttcatgctgcccattcatatcatt 2443
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>gb|AC121361.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009E21, complete sequence
          Length = 153214

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                
Query: 358   tcaatccaattgtatttcttgcaactgtccatgctgcccgttcatatcatt 408
             |||||||| || |||||||||||||||| |||||||||| |||||||||||
Sbjct: 45411 tcaatccagttttatttcttgcaactgttcatgctgcccattcatatcatt 45461
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 358      tcaatccaattgtatttcttgcaactgtccatgctgcccgttcatatcatt 408
                |||||||| || |||||||||||||||| |||||||||| |||||||||||
Sbjct: 22690212 tcaatccagttttatttcttgcaactgttcatgctgcccattcatatcatt 22690262
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>dbj|AK065821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043G04, full
            insert sequence
          Length = 3034

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 358  tcaatccaattgtatttcttgcaactgtccatgctgcccgttcatatcatt 408
            |||||||| || |||||||||||||||| |||||||||| |||||||||||
Sbjct: 2667 tcaatccagttttatttcttgcaactgttcatgctgcccattcatatcatt 2617
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>gb|AY821693.1| Australopyrum velutinum beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1595

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 1    gaatctttaaaaaggcttatatttaggaatagaggaagta 40
            |||||| ||||||| |||||||||||||| ||||| ||||
Sbjct: 1338 gaatctctaaaaagacttatatttaggaacagagggagta 1377



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 2    aatctttaaaaaggcttatatttaggaa 29
            ||||| ||||||| ||||||||||||||
Sbjct: 1254 aatctctaaaaagacttatatttaggaa 1227
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>gb|AF308474.1|AF308474 Hordeum vulgare asparaginase gene, complete cds
          Length = 2659

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 5    ctttaaaaaggcttatatttaggaatagaggaagta 40
            |||||||||| ||||||||||||||| |||| ||||
Sbjct: 1480 ctttaaaaagacttatatttaggaatggagggagta 1445
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>gb|AY821692.1| Australopyrum retrofractum beta amylase gene, partial cds; and
            Stowaway MITE, complete sequence
          Length = 1602

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 1    gaatctttaaaaaggcttatatttaggaatagagg 35
            |||||| ||||||| |||||||||||||| |||||
Sbjct: 1344 gaatctctaaaaagacttatatttaggaacagagg 1378



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 2    aatctttaaaaaggcttatatttaggaa 29
            ||||| ||||||| ||||||||||||||
Sbjct: 1260 aatctctaaaaagacttatatttaggaa 1233
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>gb|AY133250.1|AY133250S1 Hordeum vulgare subsp. vulgare starch synthase II gene, exons 1
            through 8
          Length = 4976

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 2    aatctttaaaaaggcttatatttaggaatagaggaagta 40
            ||||| ||||||| ||||||||||||||| |||| ||||
Sbjct: 2246 aatctataaaaagacttatatttaggaatggaggcagta 2208
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 2     aatctttaaaaaggcttatatttaggaatagaggaagta 40
             |||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 23399 aatctttagaaagacttatatttaggaacagagggagta 23437
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 3      atctttaaaaaggcttatatttaggaa 29
              |||||||||||| ||||||||||||||
Sbjct: 136721 atctttaaaaagacttatatttaggaa 136695



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 3     atctttaaaaaggcttatatttaggaa 29
             |||||||||||| ||||||||||||||
Sbjct: 97008 atctttaaaaagacttatatttaggaa 96982
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>gb|AF460219.1| Hordeum vulgare subsp. vulgare nuclear transcription factor SLN1
           gene, complete cds
          Length = 4098

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 1   gaatctttaaaaaggcttatatttaggaatagaggaagtatca 43
           |||||| ||||| | ||||||||||||||  ||||||||||||
Sbjct: 824 gaatctctaaaatgtcttatatttaggaacggaggaagtatca 866
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>gb|AC102039.8| Mus musculus chromosome 5, clone RP23-262L7, complete sequence
          Length = 168142

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 14     ggcttatatttaggaatagagg 35
              ||||||||||||||||||||||
Sbjct: 166751 ggcttatatttaggaatagagg 166730
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>emb|AL157776.15| Human DNA sequence from clone RP11-68J15 on chromosome 6 Contains part
             of the NUP153 gene for nucleoporin 153kD, complete
             sequence
          Length = 70043

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 252   aagaatacatgattgttcaaaa 273
             ||||||||||||||||||||||
Sbjct: 20288 aagaatacatgattgttcaaaa 20309
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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098
           cyclic nucleotide-gated ion channel 4 (Nec1) gene,
           complete cds
          Length = 9090

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 2   aatctttaaaaaggcttatatttaggaatagaggaagtatcagaga 47
           ||||| ||||||| ||||||||||||||  |||| ||||| |||||
Sbjct: 308 aatctctaaaaagtcttatatttaggaacggagggagtattagaga 353
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 8       taaaaaggcttatatttaggaatagaggaagtat 41
               |||||| |||||||||||| |||||||| |||||
Sbjct: 7691740 taaaaatgcttatatttagaaatagaggcagtat 7691773
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>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0079K11
          Length = 130082

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 8     taaaaaggcttatatttaggaatagaggaagtat 41
             |||||| |||||||||||| |||||||| |||||
Sbjct: 59302 taaaaatgcttatatttagaaatagaggcagtat 59335
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>gb|AY109063.1| Zea mays PCO138300 mRNA sequence
          Length = 623

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 356 tatcaatccaattgtatttcttgcaactgt 385
           ||||||||||||| ||||||||||| ||||
Sbjct: 307 tatcaatccaattttatttcttgcatctgt 278
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>gb|AC102056.17| Mus musculus chromosome 5, clone RP23-190H2, complete sequence
          Length = 184495

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 14     ggcttatatttaggaatagagg 35
              ||||||||||||||||||||||
Sbjct: 125314 ggcttatatttaggaatagagg 125335
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>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete
             sequence
          Length = 129655

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 16    cttatatttaggaatagaggaagta 40
             |||||||||||||||||||| ||||
Sbjct: 84418 cttatatttaggaatagagggagta 84442
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1    gaatctttaaaaaggcttatatttaggaa 29
            |||||| ||||||| ||||||||||||||
Sbjct: 4772 gaatctctaaaaagacttatatttaggaa 4744
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>gb|AC125259.8| Mus musculus chromosome 19, clone RP24-202G16, complete sequence
          Length = 159753

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 238    ctaaaaggcaaagaaagaata 258
              |||||||||||||||||||||
Sbjct: 145874 ctaaaaggcaaagaaagaata 145894
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 16       cttatatttaggaatagaggaagta 40
                |||||||||||||||||||| ||||
Sbjct: 26436378 cttatatttaggaatagagggagta 26436402
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>emb|CR626934.1| Triticum aestivum
          Length = 94398

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 8     taaaaaggcttatatttaggaatagaggaagta 40
             ||||||| |||||||||||||| ||||| ||||
Sbjct: 49944 taaaaagacttatatttaggaacagagggagta 49912
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>gb|AC148609.23| Medicago truncatula clone mth2-58e8, complete sequence
          Length = 132218

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 16    cttatatttaggaatagaggaagta 40
             ||||||||||| |||||||||||||
Sbjct: 73467 cttatatttagaaatagaggaagta 73443
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>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete
            cds
          Length = 15688

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1    gaatctttaaaaaggcttatatttaggaa 29
            |||||| ||||||| ||||||||||||||
Sbjct: 8760 gaatctctaaaaagacttatatttaggaa 8732
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>dbj|AK037052.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930104J20 product:unclassifiable, full
           insert sequence
          Length = 2199

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 238 ctaaaaggcaaagaaagaata 258
           |||||||||||||||||||||
Sbjct: 110 ctaaaaggcaaagaaagaata 130
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 16       cttatatttaggaatagaggaagta 40
                |||||||||||||||||||| ||||
Sbjct: 26527687 cttatatttaggaatagagggagta 26527711
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 16       cttatatttaggaatagaggaagtatcag 44
                ||||||||| ||||| |||||||||||||
Sbjct: 20491539 cttatattttggaatggaggaagtatcag 20491511
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>gb|AC122441.6| Mus musculus BAC clone RP24-225A21 from chromosome 8, complete sequence
          Length = 177689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 321    gtgaagatacactttaaagga 341
              |||||||||||||||||||||
Sbjct: 154825 gtgaagatacactttaaagga 154845
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>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0069D13
          Length = 157088

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 16     cttatatttaggaatagaggaagtatcag 44
              ||||||||| ||||| |||||||||||||
Sbjct: 133963 cttatattttggaatggaggaagtatcag 133935
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>gb|AC016791.23| Mus musculus chromosome 19, clone RP23-187B17, complete sequence
          Length = 172942

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    ctaaaaggcaaagaaagaata 258
              |||||||||||||||||||||
Sbjct: 115961 ctaaaaggcaaagaaagaata 115941
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>gb|DQ154923.1| Hordeum vulgare RAB7 (RAB7) gene, exons 1 through 6 and partial cds;
            and delta-1-pyrroline-5-carboxylate dehydrogenase (P5CDH)
            gene, complete cds
          Length = 13878

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 1    gaatctttaaaaaggcttatatttaggaatagaggaagtat 41
            |||||| ||||||| | ||||||||||||| |||| |||||
Sbjct: 7452 gaatctctaaaaagacctatatttaggaatggagggagtat 7412



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 2    aatctttaaaaaggcttatatttaggaa 29
            ||||| ||||||| ||||||||||||||
Sbjct: 7536 aatctctaaaaagacttatatttaggaa 7563
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>gb|BC021451.1| Mus musculus armadillo repeat containing 1, mRNA (cDNA clone
            MGC:29418 IMAGE:5043872), complete cds
          Length = 2955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ttgaagccatccagtgttgc 294
            ||||||||||||||||||||
Sbjct: 2446 ttgaagccatccagtgttgc 2465
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>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 2      aatctttaaaaaggcttatatttaggaa 29
              ||||| ||||||| ||||||||||||||
Sbjct: 260196 aatctctaaaaagacttatatttaggaa 260169
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 2     aatctttaaaaaggcttatatttaggaa 29
             ||||| ||||||| ||||||||||||||
Sbjct: 76937 aatctctaaaaagacttatatttaggaa 76964
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>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 2     aatctttaaaaaggcttatatttaggaatagaggaagtat 41
             ||||||||||||   |||||||||||||  ||||||||||
Sbjct: 27475 aatctttaaaaatatttatatttaggaacggaggaagtat 27436
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>ref|XM_458709.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0D06369g)
           partial mRNA
          Length = 402

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 262 gattgttcaaaacttgaagccatc 285
           ||||||| ||||||||||||||||
Sbjct: 132 gattgttgaaaacttgaagccatc 155
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>gb|AC147992.3| Mus musculus BAC clone RP24-384K8 from chromosome 18, complete sequence
          Length = 239075

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ataatgaaagaaaatataaa 235
              ||||||||||||||||||||
Sbjct: 132963 ataatgaaagaaaatataaa 132944
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>gb|AC118540.15| Mus musculus strain 129/SvJ clone mgs1-169d12 map 3, complete sequence
          Length = 191014

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ttgaagccatccagtgttgc 294
             ||||||||||||||||||||
Sbjct: 17560 ttgaagccatccagtgttgc 17541
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>ref|XM_909095.2| PREDICTED: Mus musculus similar to armadillo repeat-containing
            protein (LOC634390), mRNA
          Length = 2255

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ttgaagccatccagtgttgc 294
            ||||||||||||||||||||
Sbjct: 1885 ttgaagccatccagtgttgc 1904
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>gb|AC124432.5| Mus musculus BAC clone RP24-243L15 from chromosome 18, complete sequence
          Length = 160728

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    ataatgaaagaaaatataaa 235
              ||||||||||||||||||||
Sbjct: 108550 ataatgaaagaaaatataaa 108569
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>gb|AC132419.3| Mus musculus BAC clone RP23-252B17 from chromosome 18, complete
            sequence
          Length = 190421

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 275  ttgaagccatccagtgttgc 294
            ||||||||||||||||||||
Sbjct: 1029 ttgaagccatccagtgttgc 1010
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>gb|AC126807.4| Mus musculus BAC clone RP23-306D4 from chromosome 18, complete sequence
          Length = 244566

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ttgaagccatccagtgttgc 294
             ||||||||||||||||||||
Sbjct: 24130 ttgaagccatccagtgttgc 24149
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>gb|AC127283.2| Mus musculus BAC clone RP23-323E20 from chromosome 3, complete sequence
          Length = 210014

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 275   ttgaagccatccagtgttgc 294
             ||||||||||||||||||||
Sbjct: 45926 ttgaagccatccagtgttgc 45907
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>ref|XM_649809.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (41.t00021)
           partial mRNA
          Length = 447

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 gataatgaaagaaaatataa 234
           ||||||||||||||||||||
Sbjct: 348 gataatgaaagaaaatataa 367
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>ref|XM_732401.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301916.00.0)
           partial mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 ataatgaaagaaaatataaa 235
           ||||||||||||||||||||
Sbjct: 304 ataatgaaagaaaatataaa 323
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>ref|XM_728202.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000074.03.0)
           partial mRNA
          Length = 399

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 ataatgaaagaaaatataaa 235
           ||||||||||||||||||||
Sbjct: 157 ataatgaaagaaaatataaa 176
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>ref|XM_662156.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20337)
           partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 238 ctaaaaggcaaagaaagaatacat 261
           |||||||||||| |||||||||||
Sbjct: 299 ctaaaaggcaaaaaaagaatacat 322
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>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 245907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   ggacttttgacagctcgctg 439
             ||||||||||||||||||||
Sbjct: 88126 ggacttttgacagctcgctg 88107
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>emb|AL138893.5| Human DNA sequence from clone RP11-159L16 on chromosome 9p21.1-21.3,
             complete sequence
          Length = 157039

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 143   ccatataacctgccaatttctcttctca 170
             |||||| ||||| |||||||||||||||
Sbjct: 25103 ccatatgacctggcaatttctcttctca 25130
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>emb|CR382136.1| Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces
              hansenii
          Length = 1602771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    gattgttcaaaacttgaagccatc 285
              ||||||| ||||||||||||||||
Sbjct: 459345 gattgttgaaaacttgaagccatc 459322
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>gb|AC073365.14| Homo sapiens 3 BAC RP11-479M14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179598

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     ttaaaaaggcttatatttag 26
             ||||||||||||||||||||
Sbjct: 55801 ttaaaaaggcttatatttag 55820
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>gb|AC117473.3| Homo sapiens 3 BAC RP11-730J6 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167691

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 24     taggaatagaggaagtatcagaga 47
              |||||| |||||||||||||||||
Sbjct: 121778 taggaagagaggaagtatcagaga 121755
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>gb|AC098687.3| Bos taurus clone rp42-194o5, complete sequence
          Length = 156543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   ataatgaaagaaaatataaa 235
             ||||||||||||||||||||
Sbjct: 33395 ataatgaaagaaaatataaa 33376
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>gb|AC118469.2| Homo sapiens chromosome 1 clone RP11-366L18, complete sequence
          Length = 96001

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  taaaaggcaaagaaagaata 258
            ||||||||||||||||||||
Sbjct: 3760 taaaaggcaaagaaagaata 3741
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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 2     aatctttaaaaaggcttatatttaggaa 29
             ||||| ||||||| ||||||||||||||
Sbjct: 83503 aatctctaaaaagacttatatttaggaa 83476
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>gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, complete sequence
          Length = 173765

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   taatgaaagaaaatataaac 236
             ||||||||||||||||||||
Sbjct: 25646 taatgaaagaaaatataaac 25665
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>gb|AC020734.6| Homo sapiens BAC clone RP11-665I14 from 4, complete sequence
          Length = 196550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    gattgtccatttggtatgta 99
             ||||||||||||||||||||
Sbjct: 90423 gattgtccatttggtatgta 90404
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>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence
          Length = 103866

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 2     aatctttaaaaaggcttatatttaggaatagaggaagtat 41
             ||||| || |||| ||||||||||||||  ||||||||||
Sbjct: 23234 aatctctacaaagacttatatttaggaacggaggaagtat 23273
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>gb|AC161057.2| Mus musculus BAC clone RP23-248K11 from chromosome 12, complete
             sequence
          Length = 217206

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tgaaagaaaatataaaccct 239
             ||||||||||||||||||||
Sbjct: 89781 tgaaagaaaatataaaccct 89762
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>gb|AE008686.1|AE008686 Mus musculus T-cell receptor alpha/delta locus  section 4 of 4 of the
              complete region
          Length = 461875

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 221    gaaagaaaatataaaccctaaaag 244
              ||||||||| ||||||||||||||
Sbjct: 390714 gaaagaaaaaataaaccctaaaag 390737
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>ref|XM_626512.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_3210),
           partial mRNA
          Length = 894

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 238 ctaaaaggcaaagaaagaatacat 261
           |||||||||||| |||||||||||
Sbjct: 299 ctaaaaggcaaaaaaagaatacat 322
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>dbj|AK014031.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched
           library, clone:3110009G21 product:RIKEN cDNA 3110009G21
           gene, full insert sequence
          Length = 1036

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 275 ttgaagccatccagtgttgc 294
           ||||||||||||||||||||
Sbjct: 543 ttgaagccatccagtgttgc 562
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>gb|AC026799.4| Homo sapiens chromosome 5 clone CTD-2366H10, complete sequence
          Length = 162918

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  gcaaagaaagaatacatgat 264
            ||||||||||||||||||||
Sbjct: 3407 gcaaagaaagaatacatgat 3388
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>dbj|AK034483.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330198P08 product:hypothetical protein,
            full insert sequence
          Length = 3071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ttgaagccatccagtgttgc 294
            ||||||||||||||||||||
Sbjct: 1845 ttgaagccatccagtgttgc 1864
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>emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B recombinant
          Length = 4946

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 2    aatctttaaaaaggcttatatttaggaa 29
            ||||||||||| | ||||||||||||||
Sbjct: 1255 aatctttaaaaggtcttatatttaggaa 1228
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>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence
          Length = 157051

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   taatgaaagaaaatataaac 236
             ||||||||||||||||||||
Sbjct: 93419 taatgaaagaaaatataaac 93438
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 16       cttatatttaggaatagaggaagtatca 43
                ||||||||| || |||||||||||||||
Sbjct: 17069639 cttatattttgggatagaggaagtatca 17069612
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>gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q21-q23, complete
             sequence
          Length = 109808

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     aatctttaaaaaggcttata 21
             ||||||||||||||||||||
Sbjct: 30080 aatctttaaaaaggcttata 30061
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>ref|XM_342369.2| PREDICTED: Rattus norvegicus similar to very large G protein-coupled
            receptor 1 (LOC362068), mRNA
          Length = 11382

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  ataatgaaagaaaatataaa 235
            ||||||||||||||||||||
Sbjct: 4510 ataatgaaagaaaatataaa 4529
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>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
          Length = 77136

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aaaaggcttatatttaggaa 29
             ||||||||||||||||||||
Sbjct: 56808 aaaaggcttatatttaggaa 56789
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>gb|AC026736.4|AC026736 Homo sapiens chromosome 5 clone CTD-2350M8, complete sequence
          Length = 108661

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   gcaaagaaagaatacatgat 264
             ||||||||||||||||||||
Sbjct: 10862 gcaaagaaagaatacatgat 10881
to top
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 2     aatctttaaaaaggcttatatttaggaa 29
             ||||||||||| | ||||||||||||||
Sbjct: 61132 aatctttaaaaggtcttatatttaggaa 61159
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 10    aaaaggcttatatttaggaatagaggaagtat 41
             ||||| |||||||||||||| ||||| |||||
Sbjct: 85367 aaaagacttatatttaggaacagagggagtat 85398
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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 16    cttatatttaggaatagaggaagtatca 43
             ||||||||| || |||||||||||||||
Sbjct: 22765 cttatattttgggatagaggaagtatca 22738
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>gb|AC155888.2| Medicago truncatula chromosome 7 BAC clone mth2-30a12, complete
             sequence
          Length = 104265

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    aaggcttatatttaggaatagagg 35
             ||||||||||||||||| ||||||
Sbjct: 42607 aaggcttatatttaggattagagg 42630
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>ref|NM_028840.2| Mus musculus armadillo repeat containing 1 (Armc1), mRNA
          Length = 2955

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 275  ttgaagccatccagtgttgc 294
            ||||||||||||||||||||
Sbjct: 2446 ttgaagccatccagtgttgc 2465
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>emb|AL110498.1|CEY64G10A Caenorhabditis elegans YAC Y64G10A, complete sequence
          Length = 87428

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   agaaaatataaaccctaaaa 243
             ||||||||||||||||||||
Sbjct: 59183 agaaaatataaaccctaaaa 59164
to top
>gb|M64239.1|MUSTCRA Mouse T-cell receptor alpha/delta chain locus
          Length = 94647

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   gaaagaaaatataaaccctaaaag 244
             ||||||||| ||||||||||||||
Sbjct: 23486 gaaagaaaaaataaaccctaaaag 23509


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,436,834
Number of Sequences: 3902068
Number of extensions: 5436834
Number of successful extensions: 114870
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114470
Number of HSP's gapped (non-prelim): 400
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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