ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46f10 |
|---|---|
| Clone Library Name | barley_pub |
>EXPA6_ARATH (Q38865) Alpha-expansin 6 precursor (AtEXPA6) (At-EXP6) (AtEx6)| (Ath-ExpAlpha-1.8) Length = 257 Score = 30.8 bits (68), Expect = 0.89 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 112 CTENTHHPTDNGGWCSAMQPN 174 C N P+DNGGWC+ +P+ Sbjct: 110 CPPNFAQPSDNGGWCNPPRPH 130
>EXPA4_ARATH (O48818) Alpha-expansin 4 precursor (AtEXPA4) (At-EXP4) (AtEx4)| (Ath-ExpAlpha-1.6) Length = 257 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +1 Query: 112 CTENTHHPTDNGGWCSAMQPNVWHPKQQHY 201 C N P+DNGGWC +P ++H+ Sbjct: 110 CPPNLAQPSDNGGWC--------NPPREHF 131
>METE_SCHPO (Q9UT19) Probable| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 764 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Frame = -1 Query: 186 WMPNIGLHCTAPPTVVGRV-----MSVFCAQKMQ-VLSVMRGGKLKYPLQVINWN 40 W+ + G C PP +VG V M+V +Q Q + S G L P+ ++ W+ Sbjct: 519 WVQSYGSRCVRPPIIVGDVYRPAPMTVKESQYAQSITSKPMKGMLTAPITILRWS 573
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Frame = -3 Query: 157 CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 56 C H+C+ G +C + LC Y G+ EIPPA Sbjct: 1087 CKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEIPPA 1123
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = -3 Query: 157 CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPP 59 C HRC+ G +C + LC Y G+ EIPP Sbjct: 1087 CRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEIPP 1122
>EXP16_ARATH (Q9M2S9) Alpha-expansin 16 precursor (AtEXPA16) (At-EXP16) (AtEx16)| (Ath-ExpAlpha-1.7) Length = 260 Score = 28.9 bits (63), Expect = 3.4 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +1 Query: 112 CTENTHHPTDNGGWCS 159 C N P+DNGGWC+ Sbjct: 113 CPPNLAQPSDNGGWCN 128
>LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 364 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +2 Query: 74 FPPLITESTCIFCAQKTLITLPTTVGGAVQCSPMFG 181 FP L + I A LI PTT+ G V S MFG Sbjct: 213 FPQLTVQHQLIDSAAMILIKSPTTLNGIVITSNMFG 248
>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)| (AtEx17) (Ath-ExpAlpha-1.13) Length = 255 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 112 CTENTHHPTDNGGWCSAMQPNVWHPKQQHYFVTITR 219 C N +DNGGWC+ +P+ Q F+TI + Sbjct: 108 CPPNFAQASDNGGWCNPPRPH--FDMAQPAFLTIAK 141
>Y2562_VIBVU (Q8D9N5) Hypothetical protein VV1_2562| Length = 288 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +1 Query: 43 PIYDLQGVFQFSSPHNREYLHFLCTENTHHPTDNGGWCSA-MQPNVWHPKQQHYF 204 P+ D + ++F YLH L E + D + A +QPN WH K +F Sbjct: 98 PLEDTENSYKFGQ--QLAYLH-LWGEQKEYGCDQDNYLGATLQPNAWHKKWSTFF 149
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Frame = -3 Query: 157 CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 56 C H+C+ G +C + LC Y G+ EIPPA Sbjct: 1087 CKDHQCQNGAQCVDEINSYACLCAEGYSGQLCEIPPA 1123
>CDC24_YEAST (P11433) Cell division control protein 24 (Calcium regulatory| protein) Length = 854 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +3 Query: 81 PS*QRVPAFSVHRKHSSPYRQRWVVQCNAAQCLASKTTTLFRYDNA 218 PS QR+ A +H KH + W + NAA S T R D + Sbjct: 347 PSKQRIGALFMHSKHFFKLYEPWSIGQNAAIEFLSSTLHKMRVDES 392
>TMC1_MOUSE (Q8R4P5) Transmembrane cochlear-expressed protein 1 (Beethoven| protein) (Deafness protein) Length = 757 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 69 SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAAQCLASKTTTLFRYDNAYL 224 S F PS +P ++ R H+S Y Q W V CN + K + R +N YL Sbjct: 588 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 634
>TMC1_HUMAN (Q8TDI8) Transmembrane cochlear-expressed protein 1| Length = 760 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +3 Query: 69 SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAAQCLASKTTTLFRYDNAYL 224 S F PS +P ++ R H+S Y Q W V CN + K + R +N YL Sbjct: 591 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 637
>YMM5_YEAST (Q12746) Hypothetical 35.3 kDa protein in HMGS-TUB3 intergenic| region Length = 312 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 96 VPAFSVHRKHSSPYRQRWVVQCNAAQCLASKTTTLFRY 209 V A+S +++ S Y RW Q + SK T L+R+ Sbjct: 55 VRAYSAYKRRRSLYPDRWTSLELEDQTIISKNTALYRF 92
>TSF_ARATH (Q9S7R5) Protein TWIN SISTER of FT (TFL1-like protein)| Length = 175 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 76 SSPHNREYLHFLCTE 120 S+PH REYLH+L T+ Sbjct: 78 SNPHQREYLHWLVTD 92
>F19A1_MOUSE (Q7TPG8) Protein FAM19A1 precursor (Chemokine-like protein TAFA-1)| Length = 133 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -3 Query: 244 SGLPGLSRYALS*RNNVVVLDA-----KHWAALHCTTHRCR*GDECFLCTENAGTLCYEG 80 S LPG + A + RN +DA K W C C G+EC +N+G +C G Sbjct: 68 SCLPG--KVAGTTRNRPSCVDASIVIGKWW----CEMEPCLEGEECKTLPDNSGWMCATG 121 Query: 79 RK 74 K Sbjct: 122 NK 123
>F19A1_HUMAN (Q7Z5A9) Protein FAM19A1 precursor (Chemokine-like protein TAFA-1)| Length = 133 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -3 Query: 244 SGLPGLSRYALS*RNNVVVLDA-----KHWAALHCTTHRCR*GDECFLCTENAGTLCYEG 80 S LPG + A + RN +DA K W C C G+EC +N+G +C G Sbjct: 68 SCLPG--KVAGTTRNRPSCVDASIVIGKWW----CEMEPCLEGEECKTLPDNSGWMCATG 121 Query: 79 RK 74 K Sbjct: 122 NK 123
>D7_XENLA (P13007) Protein D7| Length = 278 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = +1 Query: 1 KTAAICNLSARHRVPIYDLQGVFQFSSPHNREYLHFLCTENTHHPTDNGGWCSAMQPNVW 180 K A C +ARHRVP +L +S R + + +H + W S VW Sbjct: 38 KILATCPYNARHRVPKQELD--LHMASCEYRVTMEPISAAFSHQKVETSTWQSPPCEEVW 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,990,281 Number of Sequences: 219361 Number of extensions: 1023755 Number of successful extensions: 2533 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2532 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
