ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46f09 |
|---|---|
| Clone Library Name | barley_pub |
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 34.7 bits (78), Expect = 0.060 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -2 Query: 346 PEMGHKGEEGSSREPGTVSGEGEEGKAAP 260 P GHKGEEG E G V G+G + P Sbjct: 153 PSNGHKGEEGDGEEEGAVGGDGNDHPPPP 181
>DYH1A_CHLRE (Q9SMH3) Dynein-1-alpha heavy chain, flagellar inner arm I1 complex| (1-alpha DHC) (Dynein-1, subspecies f) Length = 4625 Score = 32.0 bits (71), Expect = 0.39 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 331 KGEEGSSREPGTVSGEGEEGKAAP 260 +GEE +EPG GEG EG AP Sbjct: 79 EGEEHDGQEPGEAGGEGAEGSTAP 102
>Y1356_MYCBO (P64806) Hypothetical protein Mb1356| Length = 98 Score = 31.6 bits (70), Expect = 0.50 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 205 ETPPASVDERRQWHAQSWFRYESFGPRAK 119 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1| Length = 98 Score = 31.6 bits (70), Expect = 0.50 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 205 ETPPASVDERRQWHAQSWFRYESFGPRAK 119 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 291 QEKAKKERLRLWQYGDVESD 232 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 291 QEKAKKERLRLWQYGDVESD 232 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 291 QEKAKKERLRLWQYGDVESD 232 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A| subunit (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 30.8 bits (68), Expect = 0.86 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKA 266 G E H EGS +PG GE E GKA Sbjct: 899 GRESDHHAREGSLEQPGFWEGEAERGKA 926
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 30.8 bits (68), Expect = 0.86 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 291 QEKAKKERLRLWQYGDVESD 232 QE AK RL LW+YGD +D Sbjct: 881 QESAKSARLNLWRYGDFRAD 900
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 E G+KGE GS+ G GEEGK P Sbjct: 356 ESGNKGEPGSAGPQGPPGPSGEEGKRGP 383
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 E G+KGE GS+ G GEEGK P Sbjct: 356 ESGNKGEPGSAGAQGPPGPSGEEGKRGP 383
>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKAAPVAV 251 GPE G +GE+G+ +PG V G+ G P + Sbjct: 1327 GPE-GRQGEKGAKGDPGAVGAPGKTGPVGPAGL 1358
>COLL7_MIMIV (Q5UNS9) Collagen-like protein 7| Length = 1937 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 G KGE+G PGT +G+GE+G Sbjct: 597 GDKGEKGDKGNPGTNAGKGEKG 618
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGK 269 E G+KGE G+ +PG GEEGK Sbjct: 354 ESGNKGEPGAVGQPGPPGPSGEEGK 378
>C1QT7_HUMAN (Q9BXJ2) Complement C1q tumor necrosis factor-related protein 7| precursor Length = 289 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAPV 257 G KG++G + + G + EGE+G+ P+ Sbjct: 92 GEKGDQGETGKKGPIGPEGEKGEVGPI 118
>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)| Length = 1362 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGK 269 E G+KGE G++ PG GEEGK Sbjct: 354 ESGNKGEPGAAGPPGPPGPSGEEGK 378
>CGHB_HUMAN (P01233) Choriogonadotropin beta chain precursor (Chorionic| gonadotrophin beta subunit) (CG-beta) Length = 165 Score = 30.0 bits (66), Expect = 1.5 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Frame = +3 Query: 132 PKLSY---LNHDCACHCLLSSTDAGGVSSRLELALPRRIQRLHTATGAAFPSSPSPETVP 302 P +SY L+ CA C S+TD GG R Q +++ A PS PSP +P Sbjct: 98 PVVSYAVALSCQCAL-CRRSTTDCGGPKDHPLTCDDPRFQD-SSSSKAPPPSLPSPSRLP 155 Query: 303 GSRELPSSP 329 G + P P Sbjct: 156 GPSDTPILP 164
>K0084_HUMAN (Q14699) Protein KIAA0084 (HA2022) (Fragment)| Length = 648 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -2 Query: 346 PEMGHKGEEGSSREPGTVSGEGEEGKAAPVAV 251 P G +GE +++P + SGEG+ G+ +P V Sbjct: 293 PSSGPRGEVPLAKQPSSPSGEGDGGELSPQGV 324
>DADA2_RALSO (Q8XX54) D-amino acid dehydrogenase 2 small subunit (EC 1.4.99.1)| Length = 425 Score = 29.3 bits (64), Expect = 2.5 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Frame = +3 Query: 189 DAGGVSSRLELALPRRIQRLHTATGAAFP-----SSPSPETVPGSRELPSSPL-CPISGP 350 D G S RL+ PRR+Q L+ T A FP S + P + P++P P+ GP Sbjct: 322 DLVGWSDRLD---PRRVQTLYDETRALFPAALRASDAGADAAPWAGMRPATPTGVPVVGP 378
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 + G KGE GS + G GEEGK P Sbjct: 347 DTGSKGEPGSVGQQGPAGPSGEEGKRGP 374
>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor| Length = 689 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAP 260 GH+G G +PGT G G++G+ P Sbjct: 331 GHQGLAGVPGQPGTKGGPGDQGEPGP 356
>NUP53_XENTR (Q66IJ0) Nucleoporin NUP53 (Nuclear pore complex protein Nup53)| (Nucleoporin Nup35) (35 kDa nucleoporin) Length = 330 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 246 LHTATGAAFPSSPSPETVPGSRELPSS 326 LHT PSSP + + GSR+ P+S Sbjct: 111 LHTPLSGVIPSSPECKNISGSRKRPAS 137
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 171 CLLSSTDAGGVSSRLELALPRRIQ 242 C S TD G +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 GHKG +G EPG +GEEG Sbjct: 430 GHKGAKGEIGEPGRQGHKGEEG 451 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 GHKGEEG E G V +G G Sbjct: 445 GHKGEEGDQGELGEVGAQGPPG 466
>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 GHKG +G EPG +GEEG Sbjct: 430 GHKGAKGEIGEPGRQGHKGEEG 451 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 GHKGEEG E G V +G G Sbjct: 445 GHKGEEGDQGELGEVGAQGPPG 466
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A| subunit (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKA 266 G E H+ EG PG GE E GKA Sbjct: 901 GRESDHQAREGGLEPPGFWEGEAERGKA 928
>C1QT7_MOUSE (Q8BVD7) Complement C1q tumor necrosis factor-related protein 7| precursor Length = 289 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAP 260 G KG++G + + G + EGE+G+ P Sbjct: 92 GEKGDQGETGKKGPIGPEGEKGEVGP 117
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGK 269 GP G KGE+G EPG G++G+ Sbjct: 279 GPPGGEKGEKGEQGEPGKRGKPGKDGE 305
>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (RERG) (ra-erg) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1161 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 14/64 (21%) Frame = +3 Query: 195 GGVSSRLELALPRRIQRLHTATGAAF--------------PSSPSPETVPGSRELPSSPL 332 G V SRL+ AL R++ RL T A P + S T PG +SPL Sbjct: 1038 GDVESRLD-ALQRQLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSTSPL 1096 Query: 333 CPIS 344 P+S Sbjct: 1097 LPVS 1100
>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (H-ERG) (Erg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) (eag homo Length = 1159 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 14/64 (21%) Frame = +3 Query: 195 GGVSSRLELALPRRIQRLHTATGAAF--------------PSSPSPETVPGSRELPSSPL 332 G V SRL+ AL R++ RL T A P + S T PG +SPL Sbjct: 1036 GDVESRLD-ALQRQLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSTSPL 1094 Query: 333 CPIS 344 P+S Sbjct: 1095 LPVS 1098
>FCN1_RAT (Q9WTS8) Ficolin-1 precursor (Collagen/fibrinogen domain-containing| protein 1) (Ficolin-A) (Ficolin A) (M-Ficolin) Length = 335 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAPV 257 G KGE G+ PG +GE G A+P+ Sbjct: 83 GSKGEPGTMGPPGVKGEKGERGTASPL 109
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 + G KGE G +PG+ + GE+G P Sbjct: 164 DQGDKGEAGQPGQPGSDAAPGEQGPKGP 191
>COBA2_HUMAN (P13942) Collagen alpha-2(XI) chain precursor| Length = 1736 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 E G KGE G EPG +G +G P Sbjct: 1235 ERGEKGESGQPGEPGPPGAKGPQGDDGP 1262
>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 709 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKAAPV 257 GP+ G KG++GS EPG G++G+ P+ Sbjct: 601 GPQ-GPKGQKGSVGEPGMEGPMGQKGREGPM 630 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = -2 Query: 346 PEMGHKGEEGSSREPGTVSGEGEEGKAAP 260 P G KG+ G++ EPG G G P Sbjct: 639 PGFGEKGDRGAAGEPGVQGPPGVPGSVGP 667
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 263 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 171 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor| Length = 1496 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAPV 257 GHKG EG E G +GE G P+ Sbjct: 303 GHKGLEGPKGEVGAPGSKGEAGPTGPM 329 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAAP 260 E G KGE G G + GEEGK P Sbjct: 475 EAGPKGEPGPHGIQGPIGPPGEEGKRGP 502
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEG 272 E GH+G+ G S PG +GE G Sbjct: 643 EKGHRGDPGPSGPPGLPGDDGERG 666
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEG 272 E GH+G+ G S PG +GE G Sbjct: 643 EKGHRGDPGPSGPPGLPGDDGERG 666
>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor| Length = 1691 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 340 MGHKGEEGSSREPGTVSGEGEEGKAAPVAV 251 +G KGE GS PG V G G + P + Sbjct: 794 LGPKGERGSPGTPGQVGQPGTPGSSGPYGI 823
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGK 269 GP G KGE+G EPG G++G+ Sbjct: 279 GPPGGMKGEKGEQGEPGKRGKPGKDGE 305
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGK 269 E G+KGE GS+ G GEEGK Sbjct: 362 ETGNKGEPGSAGAQGPPGPSGEEGK 386
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEG 272 G KGE G+ EPG+V +G G Sbjct: 358 GSKGESGNKGEPGSVGAQGPPG 379
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 263 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 171 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKAAPV 257 GPE G KG++GS +PG G+ G A P+ Sbjct: 607 GPE-GPKGQKGSIGDPGMEGPIGQRGLAGPM 636
>MARCO_MOUSE (Q60754) Macrophage receptor MARCO (Macrophage receptor with| collagenous structure) Length = 518 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGK 269 +MG KG+ G PG G+G+ GK Sbjct: 259 DMGMKGDTGPMGSPGAQGGKGDAGK 283
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 340 MGHKGEEGSSREPGTVSGEGEEGKAAPVAV 251 +G +G+ GS EPG +GE G+ P V Sbjct: 747 VGKQGDRGSDGEPGRDGTKGERGEDGPPGV 776
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEG 272 E GH+G+ G S PG +GE G Sbjct: 641 EKGHRGDPGPSGPPGIPGDDGERG 664
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEG 272 E GH+G+ G S PG +GE G Sbjct: 641 EKGHRGDPGPSGPPGPPGDDGERG 664
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 263 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 171 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEGKAAP 260 GP G KGE G + EPG +G++G P Sbjct: 2336 GPR-GEKGEAGRAGEPGDPGEDGQKGAPGP 2364 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAP 260 GHKGE G PG G+EG P Sbjct: 2656 GHKGEMGEPGVPGQSGAPGKEGLIGP 2681 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEG-KAAP 260 E+G KG+EG +PG GE G + AP Sbjct: 1635 EVGEKGDEGPPGDPGLPGKAGERGLRGAP 1663
>GHRL_ONCMY (Q76IQ4) Ghrelin precursor [Contains: Ghrelin-23; Ghrelin-24]| Length = 111 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -1 Query: 272 KGCACGSMETLNPTRKSKLQAG-GDPPRVGRRE 177 K + GS L+P++K +++ G G PPRVGRR+ Sbjct: 22 KSVSAGS-SFLSPSQKPQVRQGKGKPPRVGRRD 53
>FOXP1_HUMAN (Q9H334) Forkhead box protein P1| Length = 677 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +3 Query: 201 VSSRLELALPRRIQRLHTATGAAFPSSPSPETVPGSRELPSSPLCPIS-GP 350 V S A P+ + + + T + S SP+++P + P++PL P++ GP Sbjct: 371 VKSTEPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQGP 421
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +3 Query: 201 VSSRLELALPRRIQRLHTATGAAFPSSPSPETVPGSRELPSSPLCP 338 V +++ ALPR+ QR + + +PSP +P R++ P P Sbjct: 410 VVNKMAQALPRQRQRDASPGRGSHSQTPSPGALPLGRQISQQPAGP 455
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAP 260 G +G G+ +PG G+G++G A P Sbjct: 212 GPQGPSGAPGQPGQSGGQGQQGPAGP 237
>HXA10_HETFR (Q9IA27) Homeobox protein Hox-A10| Length = 271 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 343 EMGHKGEEGSSREPGTVSGEGEEGKAA 263 E+G KG EG+S T S E EE +AA Sbjct: 129 ELGRKGSEGTSPGHLTCSSEREEAEAA 155
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 213 LELALPRRIQRLHT--ATGAAFPSSPSPETVPGSRELPSSPLCPISGP 350 L L PR ++R A AA P P P + PG+ P+SP P + P Sbjct: 750 LALGSPRLVRRPPPGPAPAAASPGPPPPASPPGA---PASPRAPRTSP 794
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%) Frame = +3 Query: 273 PSSPS-----PETVPGSRELPSSPLCPISGP 350 P++PS P VP R LP +PL P GP Sbjct: 1833 PTTPSWLADIPPWVPKDRPLPPAPLSPAPGP 1863
>FOXP1_MOUSE (P58462) Forkhead box protein P1 (Forkhead-related transcription| factor 1) Length = 705 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +3 Query: 201 VSSRLELALPRRIQRLHTATGAAFPSSPSPETVPGSRELPSSPLCPIS-GP 350 V S A P+ + + + T + S SP+++P + P++PL P++ GP Sbjct: 399 VKSTEPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQGP 449
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGK 269 GH+G+ G +PG+ G G++G+ Sbjct: 329 GHRGQAGLPGQPGSKGGPGDKGE 351
>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor| Length = 445 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = +3 Query: 264 AAFPSSPSPETVPG---SRELPSSPLCPISGP 350 AAF SSP+ PG +R P +P P+SGP Sbjct: 119 AAFSSSPASPPRPGMPPTRSWPVNPQNPMSGP 150
>KCNH2_MOUSE (O35219) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (ERG1) (MERG) (Merg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) Length = 1162 Score = 27.3 bits (59), Expect = 9.5 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 14/66 (21%) Frame = +3 Query: 195 GGVSSRLELALPRRIQRLHTATGAAF--------------PSSPSPETVPGSRELPSSPL 332 G V SRL+ AL R++ RL T A P + S T PG +SPL Sbjct: 1039 GDVESRLD-ALQRQLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSASPL 1097 Query: 333 CPISGP 350 P+ GP Sbjct: 1098 LPV-GP 1102
>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor| Length = 1029 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 349 GPEMGHKGEEGSSREPGTVSGEGEEG 272 GP G KGE G +PGT G G +G Sbjct: 425 GPR-GPKGEPGRRGDPGTKGGPGSDG 449
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +3 Query: 147 LNHDCACHCLLSSTDAGGV-SSRLELALPRRIQRLHTATGAAFPSSPSPE 293 L AC S+ AGG SSR L P +I + T A P +P P+ Sbjct: 5277 LETQSACSDTSESSAAGGQGSSRRGLTKPSKIPTMSKKTTTASPRTPGPK 5326
>KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (r-ERG) (RERG) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1163 Score = 27.3 bits (59), Expect = 9.5 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 14/66 (21%) Frame = +3 Query: 195 GGVSSRLELALPRRIQRLHTATGAAF--------------PSSPSPETVPGSRELPSSPL 332 G V SRL+ AL R++ RL T A P + S T PG +SPL Sbjct: 1040 GDVESRLD-ALQRQLNRLETRLSADMATVLQLLQRQMTLVPPAYSAVTTPGPGPTSTSPL 1098 Query: 333 CPISGP 350 P+ GP Sbjct: 1099 LPV-GP 1103
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 27.3 bits (59), Expect = 9.5 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%) Frame = +3 Query: 186 TDAGGVSSRLELALPRRIQRLHTAT---GAAFPSSP-------SPETVPGSRELPSSPLC 335 T A G+S + E PRR ++ + T G + SP SP +VP LPSS LC Sbjct: 108 TRAQGLSGQ-EAEGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVPQIAPLPSSTLC 166 Query: 336 PI 341 PI Sbjct: 167 PI 168
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -2 Query: 346 PEMGHKGEEGSSREPGTVSGEGEEGKAAP 260 P G KGE G++ EPG G G P Sbjct: 638 PGSGEKGERGAAGEPGPHGPPGVPGSVGP 666
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = +3 Query: 183 STD--AGGVSSRLELALPRRIQRLHTATGAAFPSSPSPETVPGSRELPSSPLCPISGP 350 STD AG V S + +L R R+ A S P+P P P P P GP Sbjct: 551 STDPLAGLVLSDNDRSLLERWTRMARPAAPALTSVPAPAPAPTPTPTPVQPTSPPPGP 608
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 337 GHKGEEGSSREPGTVSGEGEEGKAAPVAV 251 G+KGE G+ PG +G G AP+ + Sbjct: 697 GYKGERGADGLPGLPGAQGPRGIPAPLRI 725 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,363,692 Number of Sequences: 219361 Number of extensions: 763639 Number of successful extensions: 4647 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 3190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4613 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
