ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 119 6e-24
2gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 119 6e-24
3gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 119 6e-24
4gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 119 6e-24
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
8dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
9dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
10gb|AY112472.1| Zea mays CL152_1 mRNA sequence 56 8e-05
11gb|AC168882.3| Mus musculus BAC clone RP23-80D1 from chromosome ... 44 0.30
12gb|AC125370.4| Mus musculus BAC clone RP24-399O5 from chromosome... 44 0.30
13gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 44 0.30
14emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.30
15gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.2
16gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.2
17emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.2
18ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 ... 40 4.6
19gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, com... 40 4.6
20gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, al... 40 4.6
21gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 40 4.6
22gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosom... 40 4.6
23gb|DQ196343.1| Homo sapiens prostate cancer antigen-1 (DEPC1) ge... 40 4.6
24gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence 40 4.6
25emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 s... 40 4.6
26gb|AC087521.10| Homo sapiens chromosome 11, clone RP11-613D13, c... 40 4.6
27gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 4.6
28ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, ... 40 4.6
29gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 4.6
30gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 4.6
31emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Co... 40 4.6
32gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome ... 40 4.6
33gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 4.6
34emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ... 40 4.6
35dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 4.6
36dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.6
37gb|AC140202.3| Mus musculus BAC clone RP24-330O15 from 9, comple... 40 4.6
38gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 4.6
39gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subu... 40 4.6
40gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic s... 40 4.6 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                                    
Query: 273  ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
            ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 3038



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 16   ttattgagcttaggggaaaaacaatgtat 44
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
to top
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  119 bits (60), Expect = 6e-24
 Identities = 108/124 (87%)
 Strand = Plus / Minus

                                                                        
Query: 221  tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttc 280
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||||||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                                        
Query: 281  gccttctcctgaaactgttccaggttctcgagagctgccttcctctcctttgtgccccat 340
            ||||| ||||| |||||||||||||||| |||||| | |||||||||| | ||| |||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccat 1231

                
Query: 341  ctct 344
            ||||
Sbjct: 1230 ctct 1227
to top
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                                    
Query: 273  ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
            ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 5156
to top
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                                    
Query: 273  ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
            ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 2817
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                            
Query: 213      ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
                |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                                        
Query: 273      ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
                ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 19118776



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 16       ttattgagcttaggggaaaaacaatgtat 44
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
to top
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                         
Query: 213   ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
             |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                                     
Query: 273   ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
             ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 17025



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 16    ttattgagcttaggggaaaaacaatgtat 44
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
to top
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Plus

                                                                          
Query: 213    ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
              |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                                      
Query: 273    ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
              ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 124297



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 16     ttattgagcttaggggaaaaacaatgtat 44
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
to top
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                                    
Query: 273  ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
            ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 3036



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 16   ttattgagcttaggggaaaaacaatgtat 44
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
to top
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  119 bits (60), Expect = 6e-24
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 213  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 272
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                                    
Query: 273  ccttcttcgccttctcctgaaactgttccaggttctcgagagctgccttcctctcc 328
            ||||||| || |||||||| ||||||||||| |||| |||||| ||||| ||||||
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctcc 1054



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 16   ttattgagcttaggggaaaaacaatgtat 44
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
to top
>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 293 aactgttccaggttctcgagagctgccttcctctcctttgtgccccatctct 344
           |||||||||||||||| |||||| | |||||||||| | ||| |||||||||
Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctct 925
to top
>gb|AC168882.3| Mus musculus BAC clone RP23-80D1 from chromosome 9, complete sequence
          Length = 210475

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 310    gagagctgccttcctctccttt 331
              ||||||||||||||||||||||
Sbjct: 172192 gagagctgccttcctctccttt 172171
to top
>gb|AC125370.4| Mus musculus BAC clone RP24-399O5 from chromosome 9, complete sequence
          Length = 174033

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 310   gagagctgccttcctctccttt 331
             ||||||||||||||||||||||
Sbjct: 22420 gagagctgccttcctctccttt 22399
to top
>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 33    aaaacaatgtatatagttctct 54
             ||||||||||||||||||||||
Sbjct: 97578 aaaacaatgtatatagttctct 97599
to top
>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 97     ttcatataagctctcgactgagtttc 122
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
to top
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     ttattgagcttaggggaaaaa 36
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
to top
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    ttattgagcttaggggaaaaa 36
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
to top
>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     ttcttactaagttttcatata 104
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198
to top
>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 224 tcttcctcgtcggattcaacgtctccat 251
           ||||| ||||||| ||||||||||||||
Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
to top
>gb|AC111034.11| Mus musculus chromosome 8, clone RP23-202K1, complete sequence
          Length = 200303

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    gagctgccttcctctccttt 331
              ||||||||||||||||||||
Sbjct: 131733 gagctgccttcctctccttt 131752
to top
>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide,
           mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 cctttccttcttcgccttct 287
           ||||||||||||||||||||
Sbjct: 338 cctttccttcttcgccttct 319
to top
>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    gaaaaacaatgtatatagttctct 54
             |||||||||| |||||||||||||
Sbjct: 28326 gaaaaacaatatatatagttctct 28303
to top
>gb|AC153009.4| Mus musculus BAC clone RP23-408I18 from chromosome 9, complete sequence
          Length = 194871

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   ctgccttcctctcctttgtg 334
             ||||||||||||||||||||
Sbjct: 56231 ctgccttcctctcctttgtg 56250
to top
>gb|DQ196343.1| Homo sapiens prostate cancer antigen-1 (DEPC1) gene, complete cds
          Length = 43337

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 271   ttccttcttcgccttctcctgaaa 294
             ||||||||| ||||||||||||||
Sbjct: 23308 ttccttcttagccttctcctgaaa 23331
to top
>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 224 tcttcctcgtcggattcaacgtctccat 251
           ||||| ||||||| ||||||||||||||
Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
to top
>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2
          Length = 1813

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  cctttccttcttcgccttct 287
            ||||||||||||||||||||
Sbjct: 1771 cctttccttcttcgccttct 1752
to top
>gb|AC087521.10| Homo sapiens chromosome 11, clone RP11-613D13, complete sequence
          Length = 188967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 271   ttccttcttcgccttctcctgaaa 294
             ||||||||| ||||||||||||||
Sbjct: 61516 ttccttcttagccttctcctgaaa 61493
to top
>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tgtatatagttctcttcttc 59
             ||||||||||||||||||||
Sbjct: 87138 tgtatatagttctcttcttc 87157
to top
>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide
           (Atp1a1), mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 cctttccttcttcgccttct 287
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308
to top
>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aaaacaatgtatatagttct 52
             ||||||||||||||||||||
Sbjct: 34730 aaaacaatgtatatagttct 34711
to top
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 224   tcttcctcgtcggattcaacgtctccat 251
             ||||| ||||||| ||||||||||||||
Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
to top
>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2808

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 224 tcttcctcgtcggattcaacgtctccat 251
           ||||| ||||||| ||||||||||||||
Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
to top
>gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome 9, complete sequence
          Length = 224139

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ctgccttcctctcctttgtg 334
             ||||||||||||||||||||
Sbjct: 47480 ctgccttcctctcctttgtg 47461
to top
>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   ccaaaactttcatatctaaa 151
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580
to top
>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain
           precursor (atp1a1 gene)
          Length = 3407

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 cctttccttcttcgccttct 287
           ||||||||||||||||||||
Sbjct: 104 cctttccttcttcgccttct 85
to top
>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    aaactttcatatctaaacca 154
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031
to top
>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aaactttcatatctaaacca 154
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117
to top
>gb|AC140202.3| Mus musculus BAC clone RP24-330O15 from 9, complete sequence
          Length = 136977

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ctgccttcctctcctttgtg 334
             ||||||||||||||||||||
Sbjct: 71830 ctgccttcctctcctttgtg 71811
to top
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   tttccttcttcgccttctcc 289
             ||||||||||||||||||||
Sbjct: 98222 tttccttcttcgccttctcc 98203
to top
>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 cctttccttcttcgccttct 287
           ||||||||||||||||||||
Sbjct: 350 cctttccttcttcgccttct 331
to top
>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete
           cds
          Length = 3636

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 cctttccttcttcgccttct 287
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,764,790
Number of Sequences: 3902068
Number of extensions: 3764790
Number of successful extensions: 70209
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70110
Number of HSP's gapped (non-prelim): 99
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top