ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full... 450 e-123
2gb|AY109428.1| Zea mays CL501_1 mRNA sequence 101 2e-18
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
4gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 100 7e-18
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
6dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
7dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
8dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
9dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
10gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, comple... 44 0.37
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
12dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
13dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
14gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, comple... 42 1.5
15emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chr... 42 1.5
16gb|AC145615.3| Homo sapiens BAC clone RP11-1217H2 from UL, compl... 40 5.8
17gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, com... 40 5.8
18emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, comple... 40 5.8
19gb|AC127536.5| Homo sapiens chromosome 15, clone RP11-1181H2, co... 40 5.8
20emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 i... 40 5.8
21emb|AL512632.8| Human DNA sequence from clone RP11-538O14 on chr... 40 5.8
22emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on ch... 40 5.8
23emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chro... 40 5.8
24emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 5.8
25gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen... 40 5.8
26emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 40 5.8
27gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chrom... 40 5.8
28gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct... 40 5.8
29gb|AC092342.3| Homo sapiens chromosome 16 clone RP11-264M14, com... 40 5.8
30dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 5.8
31gb|AC095347.6| Homo sapiens 12 BAC RP11-413D8 (Roswell Park Canc... 40 5.8
32gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, comp... 40 5.8
33gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's H... 40 5.8
34tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gen... 40 5.8
35gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9... 40 5.8
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
37gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, comp... 40 5.8
38gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, comple... 40 5.8
39gb|AC140890.2| Homo sapiens chromosome 16 clone RP11-188D24, com... 40 5.8
40emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chro... 40 5.8
41gb|AC136877.2| Homo sapiens chromosome 16 clone RP11-1258I11, co... 40 5.8
42gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, co... 40 5.8
43gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence 40 5.8
44dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
45emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 ... 40 5.8
46emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 5.8
47gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence 40 5.8
48emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in... 40 5.8
49gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
50gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, comple... 40 5.8
51emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chrom... 40 5.8 
>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA
           sequence
          Length = 774

 Score =  450 bits (227), Expect = e-123
 Identities = 325/356 (91%), Gaps = 5/356 (1%)
 Strand = Plus / Minus

                                                                       
Query: 81  gatatacaatttatgcggcacaaaatgtccaggatgagtatccctaga---aaattctga 137
           ||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||
Sbjct: 695 gatatacaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctga 636

                                                                       
Query: 138 aaccaagaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacagta 197
           ||||||||||||||||| ||||||||||| |  ||  ||| | |||||||||||||| ||
Sbjct: 635 aaccaagaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaata 576

                                                                       
Query: 198 caattcacactaacttccatgaaacagcacagctgt--atgctcataactgaataatttt 255
           ||||||||||||||||||||| ||||||||  ||||  ||||||||||| ||||||||||
Sbjct: 575 caattcacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataatttt 516

                                                                       
Query: 256 gacggaatatccatccttaagttacccgtcacttacttgataagagactccatagcttca 315
           ||||||||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 515 gacggaataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttca 456

                                                                       
Query: 316 aagaatagaggcacaaactccctgtttggagtcttcactgcacactttgcaccaggagca 375
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct: 455 aagaatagaggcacaaactccctgtttggagtcttgactgcacacttggcaccaggaaca 396

                                                                   
Query: 376 ccaacggcagcagtaagctctatcaggaatggaatcccacgggggatcttcgcaga 431
           ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 395 ccaacagcagcagtaagctctatcagaaatggaatcccacgggggaccttcgcaga 340



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 15  aaagaaacaaggtgtattttcatgtactatgacatagcaagaaaaa 60
           |||||||||||  |||||||||||| ||||||||||||||||||||
Sbjct: 752 aaagaaacaagaagtattttcatgtgctatgacatagcaagaaaaa 707
to top
>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score =  101 bits (51), Expect = 2e-18
 Identities = 111/131 (84%)
 Strand = Plus / Plus

                                                                       
Query: 298 agagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgca 357
           |||| |||||||||||||||||| ||||| || | |||||| ||||| || || ||||||
Sbjct: 356 agagcctccatagcttcaaagaagagaggaaccatctccctatttggtgttttgactgca 415

                                                                       
Query: 358 cactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacgg 417
           |||||  |||||||| ||||||| ||||| |||| |||||| ||||| || || ||||||
Sbjct: 416 cacttcacaccaggaacaccaaccgcagctgtaacctctataaggaaggggattccacgg 475

                      
Query: 418 gggatcttcgc 428
           || ||||||||
Sbjct: 476 ggcatcttcgc 486
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Plus

                                                                            
Query: 290      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13561611

                                                                            
Query: 350      tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
                | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 13561612 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13561671

                                      
Query: 410      tcccacgggggatcttcgcaga 431
                | ||||| || ||||| |||||
Sbjct: 13561672 ttccacgcggaatctttgcaga 13561693
to top
>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Plus

                                                                          
Query: 290    acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
              |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 121502

                                                                          
Query: 350    tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
              | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 121503 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 121562

                                    
Query: 410    tcccacgggggatcttcgcaga 431
              | ||||| || ||||| |||||
Sbjct: 121563 ttccacgcggaatctttgcaga 121584
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Plus

                                                                            
Query: 290      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13557486

                                                                            
Query: 350      tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
                | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 13557487 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 13557546

                                      
Query: 410      tcccacgggggatcttcgcaga 431
                | ||||| || ||||| |||||
Sbjct: 13557547 ttccacgcggaatctttgcaga 13557568
to top
>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full
            insert sequence
          Length = 1904

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 290  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1669

                                                                        
Query: 350  tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
            | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 1668 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1609

                                  
Query: 410  tcccacgggggatcttcgcaga 431
            | ||||| || ||||| |||||
Sbjct: 1608 ttccacgcggaatctttgcaga 1587
to top
>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full
            insert sequence
          Length = 1842

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 290  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1420

                                                                        
Query: 350  tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
            | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 1419 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 1360

                                  
Query: 410  tcccacgggggatcttcgcaga 431
            | ||||| || ||||| |||||
Sbjct: 1359 ttccacgcggaatctttgcaga 1338
to top
>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full
           insert sequence
          Length = 834

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 119/142 (83%)
 Strand = Plus / Minus

                                                                       
Query: 290 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 349
           |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 546 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 487

                                                                       
Query: 350 tcactgcacactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaa 409
           | || ||||||||  | |||||| |||| || ||||||||||||||||||||||| || |
Sbjct: 486 tgaccgcacacttcacgccaggaacaccgactgcagcagtaagctctatcaggaagggga 427

                                 
Query: 410 tcccacgggggatcttcgcaga 431
           | ||||| || ||||| |||||
Sbjct: 426 ttccacgcggaatctttgcaga 405
to top
>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full
            insert sequence
          Length = 2979

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 113/135 (83%)
 Strand = Plus / Minus

                                                                        
Query: 297  aagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgc 356
            |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| || || ||
Sbjct: 2706 aagagactccatggcttcgaagaagagagccaccatctccttgtttggagttttgaccgc 2647

                                                                        
Query: 357  acactttgcaccaggagcaccaacggcagcagtaagctctatcaggaatggaatcccacg 416
            ||||||  | |||||| |||| || ||||||||||||||||||||||| || || |||||
Sbjct: 2646 acacttcacgccaggaacaccgactgcagcagtaagctctatcaggaaggggattccacg 2587

                           
Query: 417  ggggatcttcgcaga 431
             || ||||| |||||
Sbjct: 2586 cggaatctttgcaga 2572
to top
>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence
          Length = 95280

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 237   ctcataactgaataattttgac 258
             ||||||||||||||||||||||
Sbjct: 57533 ctcataactgaataattttgac 57512
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 103     aaatgtccaggatgagtatccc 124
               ||||||||||||||||||||||
Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897
to top
>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OSJNBa0062A09
          Length = 173541

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 103 aaatgtccaggatgagtatccc 124
           ||||||||||||||||||||||
Sbjct: 881 aaatgtccaggatgagtatccc 860
to top
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1381_H04
          Length = 130961

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 103    aaatgtccaggatgagtatccc 124
              ||||||||||||||||||||||
Sbjct: 119023 aaatgtccaggatgagtatccc 119002
to top
>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence
          Length = 167471

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     aaagaaacaaggtgtattttc 35
              |||||||||||||||||||||
Sbjct: 150588 aaagaaacaaggtgtattttc 150568
to top
>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
             sequence
          Length = 206914

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 73    aaaggcaagatatacaattta 93
             |||||||||||||||||||||
Sbjct: 50133 aaaggcaagatatacaattta 50153
to top
>gb|AC145615.3| Homo sapiens BAC clone RP11-1217H2 from UL, complete sequence
          Length = 207889

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 72280 tgtattttcatgtactatga 72261
to top
>gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, complete sequence
          Length = 182907

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 63090 tgtattttcatgtactatga 63109
to top
>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence
          Length = 31143

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aattctgaaaccaagaaact 149
             ||||||||||||||||||||
Sbjct: 26630 aattctgaaaccaagaaact 26611
to top
>gb|AC127536.5| Homo sapiens chromosome 15, clone RP11-1181H2, complete sequence
          Length = 168996

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 94366 tgtattttcatgtactatga 94385
to top
>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   tagaagtaacacaataacaa 190
             ||||||||||||||||||||
Sbjct: 80485 tagaagtaacacaataacaa 80504
to top
>emb|AL512632.8| Human DNA sequence from clone RP11-538O14 on chromosome 10, complete
             sequence
          Length = 42010

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aacacaataacaacacagta 197
             ||||||||||||||||||||
Sbjct: 10854 aacacaataacaacacagta 10835
to top
>emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on chromosome 1 Contains the 5'
              end of the CAPZB gene for capping protein (actin filament)
              muscle Z-line, beta, complete sequence
          Length = 148290

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      tcaaatcaaaaagaaacaag 25
              ||||||||||||||||||||
Sbjct: 105993 tcaaatcaaaaagaaacaag 105974
to top
>emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chromosome 13, complete
             sequence
          Length = 129575

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tcaaaggcaagatatacaatttat 94
             ||||||||||||| ||||||||||
Sbjct: 29688 tcaaaggcaagatttacaatttat 29711
to top
>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    caaggtgtattttcatgtac 41
             ||||||||||||||||||||
Sbjct: 17568 caaggtgtattttcatgtac 17549
to top
>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete
              sequence
          Length = 149978

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 290    acttgataagagactccatagcttcaaagaatagag 325
              |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662
to top
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    gtaaagtagaagtaacacaa 184
              ||||||||||||||||||||
Sbjct: 116674 gtaaagtagaagtaacacaa 116693
to top
>gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chromosome 16, complete
             sequence
          Length = 158303

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 18422 tgtattttcatgtactatga 18403
to top
>gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct7-295g23, complete
             sequence
          Length = 115747

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttccatgaaacagcacagct 231
             ||||||||||||||||||||
Sbjct: 33060 ttccatgaaacagcacagct 33041
to top
>gb|AC092342.3| Homo sapiens chromosome 16 clone RP11-264M14, complete sequence
          Length = 170324

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 68873 tgtattttcatgtactatga 68854
to top
>dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230028P05 product:unclassifiable, full
           insert sequence
          Length = 1057

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 ttccatgaaacagcacagct 231
           ||||||||||||||||||||
Sbjct: 543 ttccatgaaacagcacagct 562
to top
>gb|AC095347.6| Homo sapiens 12 BAC RP11-413D8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 91600

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aaaaagaaacaaggtgtatt 32
             ||||||||||||||||||||
Sbjct: 83298 aaaaagaaacaaggtgtatt 83317
to top
>gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence
          Length = 221452

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 99979 tgtattttcatgtactatga 99960
to top
>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   ctagaaaattctgaaaccaa 143
             ||||||||||||||||||||
Sbjct: 16993 ctagaaaattctgaaaccaa 17012
to top
>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds;
             alternatively spliced
          Length = 34001

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atgctcataactgaataatt 253
             ||||||||||||||||||||
Sbjct: 22591 atgctcataactgaataatt 22610
to top
>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence
          Length = 191373

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaaattctgaaaccaagaaa 147
             ||||||||||||||||||||
Sbjct: 33949 aaaattctgaaaccaagaaa 33968
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 290      acttgataagagactccatagcttcaaagaatagag 325
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563
to top
>gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, complete sequence
          Length = 189057

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     tgtattttcatgtactatga 46
              ||||||||||||||||||||
Sbjct: 167515 tgtattttcatgtactatga 167496
to top
>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence
          Length = 118195

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   atgctcataactgaataatt 253
             ||||||||||||||||||||
Sbjct: 13587 atgctcataactgaataatt 13606
to top
>gb|AC140890.2| Homo sapiens chromosome 16 clone RP11-188D24, complete sequence
          Length = 172153

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 23558 tgtattttcatgtactatga 23539
to top
>emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chromosome 2, complete
             sequence
          Length = 213629

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ttccatgaaacagcacagct 231
             ||||||||||||||||||||
Sbjct: 57543 ttccatgaaacagcacagct 57524
to top
>gb|AC136877.2| Homo sapiens chromosome 16 clone RP11-1258I11, complete sequence
          Length = 180454

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tgtattttcatgtactatga 46
             ||||||||||||||||||||
Sbjct: 77086 tgtattttcatgtactatga 77067
to top
>gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, complete sequence
          Length = 232529

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    agaggcacaaactccctgtt 341
              ||||||||||||||||||||
Sbjct: 146507 agaggcacaaactccctgtt 146488
to top
>gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence
          Length = 100258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aaaaagaaacaaggtgtatt 32
             ||||||||||||||||||||
Sbjct: 98032 aaaaagaaacaaggtgtatt 98013
to top
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full
           insert sequence
          Length = 575

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 290 acttgataagagactccatagcttcaaagaatagag 325
           |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364
to top
>emb|CR388185.10| Zebrafish DNA sequence from clone CH211-256G21 in linkage group 18,
              complete sequence
          Length = 178361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    gtaacacaataacaacacag 195
              ||||||||||||||||||||
Sbjct: 105946 gtaacacaataacaacacag 105927
to top
>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tagaggcacaaactccctgt 340
             ||||||||||||||||||||
Sbjct: 98529 tagaggcacaaactccctgt 98548
to top
>gb|AC170734.3| Sorex araneus clone SA_Ba-257D3, complete sequence
          Length = 122469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   cacactttgcaccaggagca 375
             ||||||||||||||||||||
Sbjct: 47122 cacactttgcaccaggagca 47103
to top
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16,
             complete sequence
          Length = 184760

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gtaaagtagaagtaacacaa 184
             ||||||||||||||||||||
Sbjct: 47402 gtaaagtagaagtaacacaa 47383



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   gtaaagtagaagtaacacaa 184
             ||||||||||||||||||||
Sbjct: 46938 gtaaagtagaagtaacacaa 46919
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 290      acttgataagagactccatagcttcaaagaatagag 325
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804
to top
>gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, complete sequence
          Length = 195405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 12     caaaaagaaacaaggtgtattttc 35
              |||||||||||||| |||||||||
Sbjct: 123637 caaaaagaaacaagttgtattttc 123660
to top
>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete
             sequence
          Length = 233417

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ttccatgaaacagcacagct 231
             ||||||||||||||||||||
Sbjct: 85626 ttccatgaaacagcacagct 85645


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,439,329
Number of Sequences: 3902068
Number of extensions: 4439329
Number of successful extensions: 84598
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84392
Number of HSP's gapped (non-prelim): 203
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top