ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
2dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
3dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
4dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
5gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA,... 76 1e-10
6gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence 66 1e-07
7gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA,... 66 1e-07
8gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 50 0.007
9emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.6
10ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 6.3
11emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 6.3
12emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-bindin... 40 6.3
13emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in ... 40 6.3
14gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 40 6.3
15gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 40 6.3
16gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, comple... 40 6.3
17emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34 40 6.3 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  129 bits (65), Expect = 9e-27
 Identities = 110/125 (88%)
 Strand = Plus / Plus

                                                                            
Query: 342      ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 401
                |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 27935778 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 27935837

                                                                            
Query: 402      cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 461
                |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 27935838 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 27935897

                     
Query: 462      ctcgg 466
                |||||
Sbjct: 27935898 ctcgg 27935902
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score =  129 bits (65), Expect = 9e-27
 Identities = 110/125 (88%)
 Strand = Plus / Plus

                                                                         
Query: 342   ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 401
             |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 13270 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 13329

                                                                         
Query: 402   cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 461
             |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 13330 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 13389

                  
Query: 462   ctcgg 466
             |||||
Sbjct: 13390 ctcgg 13394
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>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full
            insert sequence
          Length = 3709

 Score =  129 bits (65), Expect = 9e-27
 Identities = 110/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 342  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 401
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 3398 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 3339

                                                                        
Query: 402  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 461
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 3338 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 3279

                 
Query: 462  ctcgg 466
            |||||
Sbjct: 3278 ctcgg 3274
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>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full
            insert sequence
          Length = 1784

 Score =  129 bits (65), Expect = 9e-27
 Identities = 110/125 (88%)
 Strand = Plus / Minus

                                                                        
Query: 342  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 401
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 1478 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 1419

                                                                        
Query: 402  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 461
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 1418 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 1359

                 
Query: 462  ctcgg 466
            |||||
Sbjct: 1358 ctcgg 1354
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>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds
          Length = 3385

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 382  attcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgca 441
            ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| |
Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033

                                  
Query: 442  acgactcgatcgtgcctttgct 463
             ||||||||||| |||||||||
Sbjct: 3032 gcgactcgatcgagcctttgct 3011
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>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence
          Length = 2117

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 383  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 442
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843

                                 
Query: 443  cgactcgatcgtgcctttgct 463
            ||| || |||| |||||||||
Sbjct: 1842 cgattcaatcgagcctttgct 1822
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>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds
          Length = 3514

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                        
Query: 383  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 442
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117

                                 
Query: 443  cgactcgatcgtgcctttgct 463
            ||| || |||| |||||||||
Sbjct: 3116 cgattcaatcgagcctttgct 3096
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 300    aaaagaagtattatcattgtttctc 324
              |||||||||||||||||||||||||
Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 306    agtattatcattgtttctcag 326
              |||||||||||||||||||||
Sbjct: 161975 agtattatcattgtttctcag 161995
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>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1)
            partial mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  tcgctcgcaacgactcgatc 452
            ||||||||||||||||||||
Sbjct: 3898 tcgctcgcaacgactcgatc 3879
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8,
             complete sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ttacactgcacacagaaaag 304
             ||||||||||||||||||||
Sbjct: 96460 ttacactgcacacagaaaag 96441
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>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 actgcacacagaaaagaagt 308
           ||||||||||||||||||||
Sbjct: 285 actgcacacagaaaagaagt 304
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>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete
              sequence
          Length = 146969

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     aattttttacaagaatattc 79
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    aattttttacaagaatattc 157
              ||||||||||||||||||||
Sbjct: 120050 aattttttacaagaatattc 120069
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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    atacattctagcaagaatgcaaaa 201
              ||||||||||| ||||||||||||
Sbjct: 102314 atacattctagtaagaatgcaaaa 102291
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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 178   atacattctagcaagaatgcaaaa 201
             ||||||||||| ||||||||||||
Sbjct: 30566 atacattctagtaagaatgcaaaa 30589
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>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   gaaaagaagtattatcattg 318
             ||||||||||||||||||||
Sbjct: 96583 gaaaagaagtattatcattg 96564
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>emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34
          Length = 5700

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  aaaagaagtattatcattgt 319
            ||||||||||||||||||||
Sbjct: 3635 aaaagaagtattatcattgt 3654


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,152,964
Number of Sequences: 3902068
Number of extensions: 4152964
Number of successful extensions: 77102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77052
Number of HSP's gapped (non-prelim): 50
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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