ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
2dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
3gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome ... 46 0.086
4gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosom... 46 0.086
5ref|NM_101655.2| Arabidopsis thaliana transcription factor AT1G1... 42 1.4
6ref|NM_116727.2| Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2)... 42 1.4
7ref|XM_630844.1| Dictyostelium discoideum hypothetical protein (... 42 1.4
8gb|AY792513.1| Homo sapiens cytochrome P450, family 4, subfamily... 42 1.4
9gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete... 42 1.4
10emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 42 1.4
11gb|AY062575.1| Arabidopsis thaliana Unknown protein (At4g04890; ... 42 1.4
12gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
13gb|AF424560.1|AF424560 Arabidopsis thaliana AT4g04890/T1J1_3 mRN... 42 1.4
14gb|AF424554.1|AF424554 Arabidopsis thaliana At1g17920/F2H15_22 m... 42 1.4
15dbj|AB002461.2| Homo sapiens CYP4F3 gene for leukotriene B4 omeg... 42 1.4
16gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thali... 42 1.4
17gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1 42 1.4
18gb|AY108675.1| Zea mays PCO066290 mRNA sequence 42 1.4
19gb|AD000685.1|CH19R25187 Homo sapiens DNA from chromosome 19p13.... 42 1.4
20ref|NM_118295.4| Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); ... 40 5.3
21ref|NM_001036615.1| Arabidopsis thaliana ATML1 (MERISTEM LAYER 1... 40 5.3
22emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene) 40 5.3
23gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 5.3
24emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chr... 40 5.3
25gb|AY091104.1| Arabidopsis thaliana putative L1-specific homeobo... 40 5.3
26emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, ... 40 5.3
27emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, B... 40 5.3
28gb|AC099509.2| Homo sapiens chromosome 5 clone RP11-254I22, comp... 40 5.3
29gb|AY130425.1| Myxine glutinosa nuclear receptor subfamily 2 gro... 40 5.3
30gb|AY110048.1| Zea mays CL1207_1 mRNA sequence 40 5.3
31gb|U37589.1|ATU37589 Arabidopsis thaliana meristem L1 layer home... 40 5.3 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                                 
Query: 180     tttacattgatggacagaagtcaatacccgaaccattcatcctctgctgc 229
               |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509461 tttacattaatggacagaagtcaatacccgaaccattcatcctctgctgc 5509510



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 349     gacaagcatggtgcgttcttgactcc 374
               ||||||||||||||||||||||||||
Sbjct: 5509694 gacaagcatggtgcgttcttgactcc 5509719
to top
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0664C05
          Length = 165354

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 49/50 (98%)
 Strand = Plus / Plus

                                                               
Query: 180   tttacattgatggacagaagtcaatacccgaaccattcatcctctgctgc 229
             |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 56369 tttacattaatggacagaagtcaatacccgaaccattcatcctctgctgc 56418



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 349   gacaagcatggtgcgttcttgactcc 374
             ||||||||||||||||||||||||||
Sbjct: 56602 gacaagcatggtgcgttcttgactcc 56627
to top
>gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome 13, complete sequence
          Length = 235237

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 334   cagcgagaggaacgggacaagca 356
             |||||||||||||||||||||||
Sbjct: 65428 cagcgagaggaacgggacaagca 65450
to top
>gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosome 13, complete
             sequence
          Length = 214193

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 334   cagcgagaggaacgggacaagca 356
             |||||||||||||||||||||||
Sbjct: 23243 cagcgagaggaacgggacaagca 23221
to top
>ref|NM_101655.2| Arabidopsis thaliana transcription factor AT1G17920 mRNA, complete
            cds
          Length = 2755

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  gcatggtgcgttcttgactcc 374
            |||||||||||||||||||||
Sbjct: 2633 gcatggtgcgttcttgactcc 2613
to top
>ref|NM_116727.2| Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding /
            transcription factor AT4G04890 (PDF2) mRNA, complete cds
          Length = 3049

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 194  cagaagtcaatacccgaacca 214
            |||||||||||||||||||||
Sbjct: 2812 cagaagtcaatacccgaacca 2792
to top
>ref|XM_630844.1| Dictyostelium discoideum hypothetical protein (DDB0188704), partial
            mRNA
          Length = 3279

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 151  tctgaatgttcattaattgat 171
            |||||||||||||||||||||
Sbjct: 1837 tctgaatgttcattaattgat 1857
to top
>gb|AY792513.1| Homo sapiens cytochrome P450, family 4, subfamily F, polypeptide 3
            (CYP4F3) gene, complete cds
          Length = 25902

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  tgaaagaaagatgaagatggc 318
            |||||||||||||||||||||
Sbjct: 5295 tgaaagaaagatgaagatggc 5275
to top
>gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete sequence
          Length = 167771

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 117   taccatgctgggcaaaggaaa 137
             |||||||||||||||||||||
Sbjct: 66389 taccatgctgggcaaaggaaa 66409
to top
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 194  cagaagtcaatacccgaacca 214
            |||||||||||||||||||||
Sbjct: 8741 cagaagtcaatacccgaacca 8761
to top
>gb|AY062575.1| Arabidopsis thaliana Unknown protein (At4g04890; T1J1.3) mRNA,
            complete cds
          Length = 3044

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 194  cagaagtcaatacccgaacca 214
            |||||||||||||||||||||
Sbjct: 2808 cagaagtcaatacccgaacca 2788
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    gccgcagcgagaggaacggga 350
              |||||||||||||||||||||
Sbjct: 950434 gccgcagcgagaggaacggga 950454
to top
>gb|AF424560.1|AF424560 Arabidopsis thaliana AT4g04890/T1J1_3 mRNA, complete cds
          Length = 2993

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 194  cagaagtcaatacccgaacca 214
            |||||||||||||||||||||
Sbjct: 2812 cagaagtcaatacccgaacca 2792
to top
>gb|AF424554.1|AF424554 Arabidopsis thaliana At1g17920/F2H15_22 mRNA, complete cds
          Length = 2835

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 354  gcatggtgcgttcttgactcc 374
            |||||||||||||||||||||
Sbjct: 2712 gcatggtgcgttcttgactcc 2692
to top
>dbj|AB002461.2| Homo sapiens CYP4F3 gene for leukotriene B4 omega-hydroxylase,
            complete cds
          Length = 15271

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  tgaaagaaagatgaagatggc 318
            |||||||||||||||||||||
Sbjct: 3720 tgaaagaaagatgaagatggc 3700
to top
>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 75133

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 354   gcatggtgcgttcttgactcc 374
             |||||||||||||||||||||
Sbjct: 43005 gcatggtgcgttcttgactcc 43025
to top
>gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1
          Length = 53778

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 194 cagaagtcaatacccgaacca 214
           |||||||||||||||||||||
Sbjct: 794 cagaagtcaatacccgaacca 814
to top
>gb|AY108675.1| Zea mays PCO066290 mRNA sequence
          Length = 654

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 195 agaagtcaatacccgaaccat 215
           |||||||||||||||||||||
Sbjct: 321 agaagtcaatacccgaaccat 301
to top
>gb|AD000685.1|CH19R25187 Homo sapiens DNA from chromosome 19p13.1 cosmids f5004 R25187
             containing the LTB4H2 and LTB4H3 genes, genomic sequence
          Length = 52284

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   tgaaagaaagatgaagatggc 318
             |||||||||||||||||||||
Sbjct: 29435 tgaaagaaagatgaagatggc 29415
to top
>ref|NM_118295.4| Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding /
            transcription factor AT4G21750 (ATML1) transcript variant
            AT4G21750.1 mRNA, complete cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cagaagtcaatacccgaacc 213
            ||||||||||||||||||||
Sbjct: 2760 cagaagtcaatacccgaacc 2741
to top
>ref|NM_001036615.1| Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding AT4G21750
            (ATML1) transcript variant AT4G21750.2 mRNA, complete cds
          Length = 3165

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cagaagtcaatacccgaacc 213
            ||||||||||||||||||||
Sbjct: 2968 cagaagtcaatacccgaacc 2949
to top
>emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene)
          Length = 3010

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  gaagtcaatacccgaaccat 215
            ||||||||||||||||||||
Sbjct: 2667 gaagtcaatacccgaaccat 2648
to top
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2
             of 11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   aaagaaagatgaagatggcg 319
             ||||||||||||||||||||
Sbjct: 51865 aaagaaagatgaagatggcg 51884
to top
>emb|AL445188.5| Human DNA sequence from clone RP11-260E14 on chromosome 13, complete
              sequence
          Length = 164061

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    aaagaaagatgaagatggcg 319
              ||||||||||||||||||||
Sbjct: 111974 aaagaaagatgaagatggcg 111993
to top
>gb|AY091104.1| Arabidopsis thaliana putative L1-specific homeobox gene
            ATML1/ovule-specific homeobox protein A20 (At4g21750)
            mRNA, complete cds
          Length = 2956

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cagaagtcaatacccgaacc 213
            ||||||||||||||||||||
Sbjct: 2760 cagaagtcaatacccgaacc 2741
to top
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55
          Length = 194916

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cagaagtcaatacccgaacc 213
              ||||||||||||||||||||
Sbjct: 178403 cagaagtcaatacccgaacc 178384
to top
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII
             project)
          Length = 107702

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   cagaagtcaatacccgaacc 213
             ||||||||||||||||||||
Sbjct: 92345 cagaagtcaatacccgaacc 92326
to top
>gb|AC099509.2| Homo sapiens chromosome 5 clone RP11-254I22, complete sequence
          Length = 145514

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   catgctgggcaaaggaaagg 139
             ||||||||||||||||||||
Sbjct: 83090 catgctgggcaaaggaaagg 83071
to top
>gb|AY130425.1| Myxine glutinosa nuclear receptor subfamily 2 group F-like (NR2F2)
           mRNA, partial sequence
          Length = 861

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 agaagtcaatacccgaacca 214
           ||||||||||||||||||||
Sbjct: 742 agaagtcaatacccgaacca 761
to top
>gb|AY110048.1| Zea mays CL1207_1 mRNA sequence
          Length = 2985

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  gaagtcaatacccgaaccat 215
            ||||||||||||||||||||
Sbjct: 2663 gaagtcaatacccgaaccat 2644
to top
>gb|U37589.1|ATU37589 Arabidopsis thaliana meristem L1 layer homeobox protein (ATML1) mRNA,
            complete cds
          Length = 2940

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  cagaagtcaatacccgaacc 213
            ||||||||||||||||||||
Sbjct: 2706 cagaagtcaatacccgaacc 2687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,105,044
Number of Sequences: 3902068
Number of extensions: 3105044
Number of successful extensions: 57909
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57827
Number of HSP's gapped (non-prelim): 82
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top