ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA 196 4e-47
2gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA bindin... 196 4e-47
3dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
4dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
5gb|BT016256.1| Zea mays clone Contig89 mRNA sequence 190 2e-45
6gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA bindin... 155 1e-34
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
8dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
9dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
10gb|AY112472.1| Zea mays CL152_1 mRNA sequence 119 7e-24
11gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full ... 54 4e-04
12dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.088
13dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor... 46 0.088
14gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 44 0.35
15emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.35
16gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 42 1.4
17gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 1.4
18emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 42 1.4
19ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 ... 40 5.4
20gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosom... 40 5.4
21gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, al... 40 5.4
22gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, com... 40 5.4
23gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 40 5.4
24gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complet... 40 5.4
25emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chr... 40 5.4
26gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence 40 5.4
27emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in... 40 5.4
28emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k... 40 5.4
29emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 s... 40 5.4
30gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 5.4
31ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, ... 40 5.4
32gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome ... 40 5.4
33gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 5.4
34gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence 40 5.4
35emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in... 40 5.4
36emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Co... 40 5.4
37gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, comple... 40 5.4
38gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 5.4
39gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cance... 40 5.4
40gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, compl... 40 5.4
41emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in ... 40 5.4
42emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chrom... 40 5.4
43emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ... 40 5.4
44dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.4
45dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.4
46gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, comple... 40 5.4
47gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 5.4
48gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, co... 40 5.4
49gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, com... 40 5.4
50gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subu... 40 5.4
51gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic s... 40 5.4 
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3549

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094

                                                                        
Query: 276  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3034

                                                                        
Query: 336  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 395
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 3033 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2974

                       
Query: 396  tgctggattct 406
            |||||| ||||
Sbjct: 2973 tgctggtttct 2963



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 19   ttattgagcttaggggaaaaacaatgtat 47
            ||||| || ||||||||||||||||||||
Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
to top
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            mRNA, complete cds
          Length = 2961

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873

                                                                        
Query: 276  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 2813

                                                                        
Query: 336  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 395
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 2812 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2753

                       
Query: 396  tgctggattct 406
            |||||| ||||
Sbjct: 2752 tgctggtttct 2742
to top
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full
            insert sequence
          Length = 3547

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092

                                                                        
Query: 276  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3032

                                                                        
Query: 336  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 395
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 3031 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2972

                       
Query: 396  tgctggattct 406
            |||||| ||||
Sbjct: 2971 tgctggtttct 2961



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 19   ttattgagcttaggggaaaaacaatgtat 47
            ||||| || ||||||||||||||||||||
Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
to top
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full
            insert sequence
          Length = 1551

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/191 (87%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110

                                                                        
Query: 276  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 1050

                                                                        
Query: 336  tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 395
            | |||||||||||||  |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1049 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 990

                       
Query: 396  tgctggattct 406
            |||||| ||||
Sbjct: 989  tgctggtttct 979



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 19   ttattgagcttaggggaaaaacaatgtat 47
            ||||| || ||||||||||||||||||||
Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
to top
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence
          Length = 1657

 Score =  190 bits (96), Expect = 2e-45
 Identities = 156/176 (88%)
 Strand = Plus / Minus

                                                                        
Query: 224  tgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttc 283
            ||||| |||||||| |||||||| ||||| |||||||| |  ||||||||||||||||| 
Sbjct: 1350 tgctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttcttt 1291

                                                                        
Query: 284  gccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttgtgtcccat 343
            ||||| |||||||||||||||||||||| |||||| |||||||||||| | |||||||||
Sbjct: 1290 gccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccat 1231

                                                                    
Query: 344  ctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattgatgct 399
            |||||||  ||||| || ||||||||||||||||||||||||| ||| || |||||
Sbjct: 1230 ctcttgcttctttcgagccgggcaagcccttcctcaagcatggtagcgtttatgct 1175
to top
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120
            gene, complete cds
          Length = 5478

 Score =  155 bits (78), Expect = 1e-34
 Identities = 141/162 (87%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
            |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212

                                                                        
Query: 276  ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
            ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 5152

                                                      
Query: 336  tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 377
            | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 5151 tatcccatctcttgcttctttcaagccgagcaagcccttcct 5110



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 375  cctcaagcatggcagcattgatgctggattct 406
            |||||||||||| |||||||||||||| ||||
Sbjct: 4915 cctcaagcatggtagcattgatgctggtttct 4884
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  155 bits (78), Expect = 1e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                            
Query: 216      ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
                |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720

                                                                            
Query: 276      ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
                ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 19118780

                                                          
Query: 336      tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 377
                | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 19118781 tatcccatctcttgcttctttcaagccgagcaagcccttcct 19118822



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 375      cctcaagcatggcagcattgatgctggattct 406
                |||||||||||| |||||||||||||| ||||
Sbjct: 19119017 cctcaagcatggtagcattgatgctggtttct 19119048



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 19       ttattgagcttaggggaaaaacaatgtat 47
                ||||| || ||||||||||||||||||||
Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
to top
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0415B12
          Length = 157419

 Score =  155 bits (78), Expect = 1e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                         
Query: 216   ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
             |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969

                                                                         
Query: 276   ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
             ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 17029

                                                       
Query: 336   tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 377
             | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 17030 tatcccatctcttgcttctttcaagccgagcaagcccttcct 17071



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 375   cctcaagcatggcagcattgatgctggattct 406
             |||||||||||| |||||||||||||| ||||
Sbjct: 17266 cctcaagcatggtagcattgatgctggtttct 17297



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 19    ttattgagcttaggggaaaaacaatgtat 47
             ||||| || ||||||||||||||||||||
Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
to top
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  155 bits (78), Expect = 1e-34
 Identities = 141/162 (87%)
 Strand = Plus / Plus

                                                                          
Query: 216    ctggagcttgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 275
              |||||||||||||||||||||| |||||||| || ||||||||||| |   |||||||||
Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241

                                                                          
Query: 276    ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 335
              ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | |
Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 124301

                                                        
Query: 336    tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 377
              | |||||||||||||  |||||||| || |||||||||||||
Sbjct: 124302 tatcccatctcttgcttctttcaagccgagcaagcccttcct 124343



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 375    cctcaagcatggcagcattgatgctggattct 406
              |||||||||||| |||||||||||||| ||||
Sbjct: 124538 cctcaagcatggtagcattgatgctggtttct 124569



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 19     ttattgagcttaggggaaaaacaatgtat 47
              ||||| || ||||||||||||||||||||
Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
to top
>gb|AY112472.1| Zea mays CL152_1 mRNA sequence
          Length = 1436

 Score =  119 bits (60), Expect = 7e-24
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                       
Query: 296 aactgttccaggttctcgagagctgtcttcctctcctttgtgtcccatctcttgcccctt 355
           |||||||||||||||| |||||| |||||||||||| | ||||||||||||||||  |||
Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctcttgcttctt 917

                                                       
Query: 356 tcaagtcgggcaagcccttcctcaagcatggcagcattgatgct 399
           || || ||||||||||||||||||||||||| ||| || |||||
Sbjct: 916 tcgagccgggcaagcccttcctcaagcatggtagcgtttatgct 873
to top
>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence
          Length = 1394

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 380  agcatggcagcattgatgctggattct 406
            |||||||||||||||||||||||||||
Sbjct: 1389 agcatggcagcattgatgctggattct 1363
to top
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            complete cds
          Length = 3379

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 365  gcaagcccttcctcaagcatggcagcattga 395
            ||||| ||||||| |||||||||||||||||
Sbjct: 2986 gcaagtccttcctgaagcatggcagcattga 2956
to top
>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein,
            partial cds
          Length = 2343

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 365  gcaagcccttcctcaagcatggcagcattga 395
            ||||| ||||||| |||||||||||||||||
Sbjct: 1922 gcaagtccttcctgaagcatggcagcattga 1892
to top
>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 36    aaaacaatgtatatagttctct 57
             ||||||||||||||||||||||
Sbjct: 97578 aaaacaatgtatatagttctct 97599
to top
>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
              complete sequence
          Length = 165993

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 100    ttcatataagctctcgactgagtttc 125
              |||||||| |||||||||||||||||
Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
to top
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ttattgagcttaggggaaaaa 39
              |||||||||||||||||||||
Sbjct: 246866 ttattgagcttaggggaaaaa 246886
to top
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ttattgagcttaggggaaaaa 39
             |||||||||||||||||||||
Sbjct: 88447 ttattgagcttaggggaaaaa 88467
to top
>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     ttcttactaagttttcatata 107
              |||||||||||||||||||||
Sbjct: 141218 ttcttactaagttttcatata 141198
to top
>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds
          Length = 3295

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 227 tcttcctcgtcggattcaacgtctccat 254
           ||||| ||||||| ||||||||||||||
Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
to top
>gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosome 9, complete sequence
          Length = 226149

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ccatctcttgcccctttcaa 359
              ||||||||||||||||||||
Sbjct: 223814 ccatctcttgcccctttcaa 223833
to top
>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide,
           mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 cctttccttcttcgccttct 290
           ||||||||||||||||||||
Sbjct: 338 cctttccttcttcgccttct 319
to top
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence
          Length = 157629

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   cagcattgatgctggattct 406
             ||||||||||||||||||||
Sbjct: 92820 cagcattgatgctggattct 92801
to top
>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    gaaaaacaatgtatatagttctct 57
             |||||||||| |||||||||||||
Sbjct: 28326 gaaaaacaatatatatagttctct 28303
to top
>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence
          Length = 192092

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    atatagttctcttcttctaatggc 69
             |||| |||||||||||||||||||
Sbjct: 99542 atatggttctcttcttctaatggc 99565
to top
>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2
             Contains the 5' end of a novel gene, complete sequence
          Length = 94056

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   ctctcctttgtgtcccatct 345
             ||||||||||||||||||||
Sbjct: 81672 ctctcctttgtgtcccatct 81691
to top
>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 227 tcttcctcgtcggattcaacgtctccat 254
           ||||| ||||||| ||||||||||||||
Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
to top
>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete
              sequence
          Length = 185915

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     ataaatatagtctctctttc 89
              ||||||||||||||||||||
Sbjct: 181778 ataaatatagtctctctttc 181797
to top
>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE
          Length = 123977

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 280   cttcgccttctcctggaactgttccaggttct 311
             |||| |||||||||||||||  ||||||||||
Sbjct: 51074 cttcaccttctcctggaactcctccaggttct 51105
to top
>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2
          Length = 1813

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  cctttccttcttcgccttct 290
            ||||||||||||||||||||
Sbjct: 1771 cctttccttcttcgccttct 1752
to top
>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tgtatatagttctcttcttc 62
             ||||||||||||||||||||
Sbjct: 87138 tgtatatagttctcttcttc 87157
to top
>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide
           (Atp1a1), mRNA
          Length = 3636

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 cctttccttcttcgccttct 290
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308
to top
>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14,
             complete sequence
          Length = 151836

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    aaaacaatgtatatagttct 55
             ||||||||||||||||||||
Sbjct: 34730 aaaacaatgtatatagttct 34711
to top
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 227   tcttcctcgtcggattcaacgtctccat 254
             ||||| ||||||| ||||||||||||||
Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
to top
>gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence
          Length = 7342

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 46   atatagttctcttcttctaatggc 69
            |||| |||||||||||||||||||
Sbjct: 3933 atatggttctcttcttctaatggc 3910
to top
>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5,
             complete sequence
          Length = 160041

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ataaatatagtctctctttc 89
             ||||||||||||||||||||
Sbjct: 88307 ataaatatagtctctctttc 88326
to top
>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS70ZB10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 2808

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 227 tcttcctcgtcggattcaacgtctccat 254
           ||||| ||||||| ||||||||||||||
Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
to top
>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence
          Length = 111857

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tcttctaatggcataaatat 77
             ||||||||||||||||||||
Sbjct: 84384 tcttctaatggcataaatat 84403
to top
>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ccaaaactttcatatctaaa 154
             ||||||||||||||||||||
Sbjct: 29599 ccaaaactttcatatctaaa 29580
to top
>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 185470

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   gtgtccaaaactttcatatc 150
             ||||||||||||||||||||
Sbjct: 41312 gtgtccaaaactttcatatc 41293
to top
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence
          Length = 195874

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    cagcattgatgctggattct 406
              ||||||||||||||||||||
Sbjct: 137517 cagcattgatgctggattct 137536
to top
>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22,
             complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   gagctgtcttcctctccttt 334
             ||||||||||||||||||||
Sbjct: 92306 gagctgtcttcctctccttt 92287
to top
>emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chromosome 9, complete
              sequence
          Length = 193236

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    ccatctcttgcccctttcaa 359
              ||||||||||||||||||||
Sbjct: 168125 ccatctcttgcccctttcaa 168144
to top
>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain
           precursor (atp1a1 gene)
          Length = 3407

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 cctttccttcttcgccttct 290
           ||||||||||||||||||||
Sbjct: 104 cctttccttcttcgccttct 85
to top
>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete
              sequences
          Length = 175110

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    aaactttcatatctaaacca 157
              ||||||||||||||||||||
Sbjct: 139050 aaactttcatatctaaacca 139031
to top
>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete
             sequences
          Length = 170973

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aaactttcatatctaaacca 157
             ||||||||||||||||||||
Sbjct: 31136 aaactttcatatctaaacca 31117
to top
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence
          Length = 182415

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tttccttcttcgccttctcc 292
             ||||||||||||||||||||
Sbjct: 98222 tttccttcttcgccttctcc 98203
to top
>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    atatagttctcttcttctaatggc 69
             |||| |||||||||||||||||||
Sbjct: 42584 atatggttctcttcttctaatggc 42607
to top
>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence
          Length = 194167

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    atatagttctcttcttctaatggc 69
             |||| |||||||||||||||||||
Sbjct: 78320 atatggttctcttcttctaatggc 78343
to top
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence
          Length = 226189

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    cagcattgatgctggattct 406
              ||||||||||||||||||||
Sbjct: 148645 cagcattgatgctggattct 148626
to top
>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds
          Length = 3599

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 cctttccttcttcgccttct 290
           ||||||||||||||||||||
Sbjct: 350 cctttccttcttcgccttct 331
to top
>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete
           cds
          Length = 3636

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 cctttccttcttcgccttct 290
           ||||||||||||||||||||
Sbjct: 327 cctttccttcttcgccttct 308


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,389,546
Number of Sequences: 3902068
Number of extensions: 4389546
Number of successful extensions: 86590
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86438
Number of HSP's gapped (non-prelim): 152
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top