ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46e03 |
|---|---|
| Clone Library Name | barley_pub |
>PURA_DROME (Q9Y0Y2) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 447 Score = 32.7 bits (73), Expect = 0.42 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -3 Query: 279 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGL 175 I DR H+HV G+QEAEKG + + KG+ Sbjct: 123 ISDRAHLVFDFHQHVDGMQEAEKGGKSLGTTKKGI 157
>AKL1_YEAST (P38080) Serine/threonine-protein kinase AKL1 (EC 2.7.11.1)| Length = 1108 Score = 32.3 bits (72), Expect = 0.55 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = +1 Query: 265 NSVLNLSFSEMPLS---TAK*LCNFSLSSSSPTVQSA-LSSTSGLRATNS 402 N VLNLS +EM LS T + +FS SSSS ++Q A LS G N+ Sbjct: 840 NGVLNLSLNEMDLSRDDTGAAVSSFSSSSSSASIQQAKLSGRKGSSKRNN 889
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = +2 Query: 215 SASCIPCT----CLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSVHLRPPCNLPSQAHL 382 +A C CT C+W T +++ L VQ T S L +P ++ Sbjct: 1539 AADCEQCTREGKCMWTRQFKRT----GETRRILSVQPTYDWTCFSHSLLNVSPMPVESSP 1594 Query: 383 GLERQTPCCDVPFCTSCM 436 L TPC +P CTSC+ Sbjct: 1595 PLPCPTPCHLLPNCTSCL 1612
>MEGF8_RAT (Q9QYP0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) (Fragment) Length = 874 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = +2 Query: 215 SASCIPCT----CLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSVHLRPPCNLPSQAHL 382 +A C CT C+W T +++ L VQ T S L +P ++ Sbjct: 27 AADCEQCTREGKCMWTRQFKRT----GETRRILSVQPTYDWTCFSHSLLNVSPMPVESSP 82 Query: 383 GLERQTPCCDVPFCTSCM 436 L TPC +P CTSC+ Sbjct: 83 PLPCPTPCHLLPNCTSCL 100
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = +2 Query: 215 SASCIPCT----CLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSVHLRPPCNLPSQAHL 382 +A C CT C+W T +++ L VQ T S L +P ++ Sbjct: 1483 AADCEQCTREGKCMWTRQFKRT----GETRRILSVQPTYDWTCFSHSLLNVSPMPVESSP 1538 Query: 383 GLERQTPCCDVPFCTSCM 436 L TPC +P CTSC+ Sbjct: 1539 PLPCPTPCHLLPNCTSCL 1556
>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7) (Protein SET DOMAIN GR Length = 693 Score = 30.4 bits (67), Expect = 2.1 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Frame = +2 Query: 17 FMQNHQGCSNC----ILHRNCNCVTRNYD 91 F + GC NC +H+NC CV RN D Sbjct: 451 FDRQSLGCQNCRHQPCMHQNCTCVQRNGD 479
>CG146_HUMAN (Q9BSY9) UPF0326 protein CGI-146| Length = 194 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +2 Query: 191 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSV 340 + SC+PF SC+P W+T + +SS+S + L + D A S SV Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAASASV 179
>DUS1_BACSU (P37567) Probable tRNA-dihydrouridine synthase 1 (EC 1.-.-.-)| Length = 333 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -1 Query: 428 KCKRERRSKEFVALSPDVLERADCTVGEDELREKLQSHFA-VLRGISENERLRTELNH 258 K K E + +E +A+ L+R GE+ +++ H A L+G+ N +R E+NH Sbjct: 247 KLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGVKGNANVRNEINH 304
>EF2_SULAC (P23112) Elongation factor 2 (EF-2)| Length = 736 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/37 (37%), Positives = 24/37 (64%) Frame = -3 Query: 279 IEDRVEPCIVIHKHVQGIQEAEKGKQEIKKRCKGLVV 169 +E+RV P + I+K + I+E + QEI+KR L++ Sbjct: 135 LEERVRPILFINKVDRLIKELKLSSQEIQKRLIDLII 171
>SIAH2_XENLA (Q9I8X5) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Xsiah-2) Length = 313 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/62 (22%), Positives = 24/62 (38%) Frame = +2 Query: 170 TTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLSVHLR 349 T KP + P+S C +C W + ++HS K + Q + L+ + Sbjct: 141 TEKPEHEDICEYRPYSCPCPGASCKWQGSLENVMQHLTHSHKSITTLQGEDIVFLATDIN 200 Query: 350 PP 355 P Sbjct: 201 LP 202
>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi| complex-associated protein of 170 kDa) (GCP170) Length = 1498 Score = 28.9 bits (63), Expect = 6.0 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 446 QIVTYMKCKRERRSKEFVALSPDVLE--RADCTVGEDELREKLQSHFAVLRGISENERLR 273 Q V++ K E+ +E +AL+ LE R EDEL+E + R N++L Sbjct: 1052 QAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLA 1111 Query: 272 TELNH 258 EL H Sbjct: 1112 LELEH 1116
>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) Length = 325 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +2 Query: 158 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 337 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 149 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 208 Query: 338 VHLRPP 355 + P Sbjct: 209 TDINLP 214
>SIAH2_MOUSE (Q06986) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (mSiah2) Length = 325 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +2 Query: 158 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 337 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 149 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 208 Query: 338 VHLRPP 355 + P Sbjct: 209 TDINLP 214
>SIAH2_HUMAN (O43255) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia| homolog 2) (Siah-2) (hSiah2) Length = 324 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/66 (22%), Positives = 25/66 (37%) Frame = +2 Query: 158 TERKTTKPLQRFLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 337 T T KP + P+S C +C W + S + H+ K + Q + L+ Sbjct: 148 TLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLA 207 Query: 338 VHLRPP 355 + P Sbjct: 208 TDINLP 213
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 251 TMHGSTRSSISHSQKCLLVQQNDFATSLSVHLRPPCNLPSQ 373 T G + S+S + LLVQ S+ L+PP LP Q Sbjct: 3785 TEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQPPLRLPGQ 3825
>CG146_PONPY (Q5R456) UPF0326 protein CGI-146 homolog| Length = 194 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +2 Query: 191 FLISCLPFSASCIPCTCLWMTMHGSTRSSISHSQKCLLVQQNDFATSLS 337 + SC+PF SC+P W+T + +SS+S + L + D A S S Sbjct: 133 YFSSCIPFLQSCLPKE--WLT-PAALQSSVSQELQDELEEAEDAAASAS 178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,138,853 Number of Sequences: 219361 Number of extensions: 1145259 Number of successful extensions: 3492 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3406 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3489 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
