>gb|AC138456.5| Mus musculus BAC clone RP24-262P4 from 3, complete sequence
          Length = 166191

 Score = 44.1 bits (22), Expect = 0.095
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    ctcaaaattctagttaattgat 81
             ||||||||||||||||||||||
Sbjct: 70238 ctcaaaattctagttaattgat 70217

>emb|AL353695.7| Human DNA sequence from clone RP11-17L7 on chromosome 9 Contains the 5'
             end of the FUBP3 gene for far upstream element (FUSE)
             binding protein 3 (FBP3) and a CpG island, complete
             sequence
          Length = 84661

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   aaaaactaaccattgcatggt 123
             |||||||||||||||||||||
Sbjct: 50640 aaaaactaaccattgcatggt 50660

>gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, complete sequence
          Length = 207904

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    acaattctcaaaattctagt 73
             ||||||||||||||||||||
Sbjct: 69601 acaattctcaaaattctagt 69620

>gb|AC007394.4| Homo sapiens BAC clone RP11-489G12 from 2, complete sequence
          Length = 171468

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   actaaccattgcatggttaa 126
             ||||||||||||||||||||
Sbjct: 96929 actaaccattgcatggttaa 96948

>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
             complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    attgatggataacaagaccc 95
             ||||||||||||||||||||
Sbjct: 62665 attgatggataacaagaccc 62684

>gb|AC173209.3| Mus musculus BAC clone RP24-316K19 from chromosome 13, complete sequence
          Length = 179701

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ttttaaagcaaacaaaccag 43
              ||||||||||||||||||||
Sbjct: 102005 ttttaaagcaaacaaaccag 101986

>gb|AE017137.1| Yersinia pestis biovar Medievalis str. 91001 section 11 of 16 of the
             complete genome
          Length = 291817

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   ctaaccattgcatggttaa 126
             |||||||||||||||||||
Sbjct: 63403 ctaaccattgcatggttaa 63385

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 108     ctaaccattgcatggttaa 126
               |||||||||||||||||||
Sbjct: 1582027 ctaaccattgcatggttaa 1582045

>emb|AL731533.8| Human DNA sequence from clone RP11-118K6 on chromosome 10 Contains a
             novel gene, the 5' end of the PFKP gene for
             phosphofructokinase platelet and a CpG island, complete
             sequence
          Length = 98398

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    gattttaaagcaaacaaac 40
             |||||||||||||||||||
Sbjct: 25907 gattttaaagcaaacaaac 25889

>emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on chromosome Xq13.3-21.1
             Contains the 5' end of the NSBP1 gene for nucleosomal
             binding protein 1 and the SH3BGRL gene for SH3 domain
             binding glutamic acid-rich protein like, complete sequence
          Length = 164012

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaagcaaacaaaccagttc 46
             |||||||||||||||||||
Sbjct: 94428 aaagcaaacaaaccagttc 94410

>emb|AL354680.14| Human DNA sequence from clone RP11-536F8 on chromosome 6p23-24.3
             Contains part of gene KIAA1733 and a CpG island, complete
             sequence
          Length = 194845

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 27    taaagcaaacaaaccagttcctt 49
             ||||||| |||||||||||||||
Sbjct: 99749 taaagcacacaaaccagttcctt 99771

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     ctaaccattgcatggttaa 126
               |||||||||||||||||||
Sbjct: 3281270 ctaaccattgcatggttaa 3281252

>emb|AJ414155.1| Yersinia pestis strain CO92 complete genome; segment 15/20
          Length = 205050

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   ctaaccattgcatggttaa 126
             |||||||||||||||||||
Sbjct: 37626 ctaaccattgcatggttaa 37608

>gb|AC078854.16| Homo sapiens 3q BAC RP11-480B17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162313

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    atagattttaaagcaaaca 37
             |||||||||||||||||||
Sbjct: 30337 atagattttaaagcaaaca 30319

>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23,
             complete sequence
          Length = 158509

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    atagattttaaagcaaaca 37
             |||||||||||||||||||
Sbjct: 40981 atagattttaaagcaaaca 40963

>gb|AC046176.13| Homo sapiens chromosome 8, clone RP11-446E9, complete sequence
          Length = 184349

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    ttttaaagcaaacaaacca 42
             |||||||||||||||||||
Sbjct: 86570 ttttaaagcaaacaaacca 86552

>gb|AC105391.1| Homo sapiens BAC clone RP11-311D14 from 4, complete sequence
          Length = 143498

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 53   tacaattctcaaaattcta 71
            |||||||||||||||||||
Sbjct: 7563 tacaattctcaaaattcta 7581

>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    attttaaagcaaacaaacc 41
             |||||||||||||||||||
Sbjct: 71677 attttaaagcaaacaaacc 71659

>emb|BX255948.4| Zebrafish DNA sequence from clone CH211-250J1, complete sequence
          Length = 194257

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aaagcaaacaaaccagttc 46
              |||||||||||||||||||
Sbjct: 136972 aaagcaaacaaaccagttc 136954

>gb|AC096733.3| Homo sapiens BAC clone RP11-102N12 from 4, complete sequence
          Length = 189031

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 35   acaaaccagttccttacat 53
            |||||||||||||||||||
Sbjct: 6703 acaaaccagttccttacat 6721

>emb|BX248087.9| Zebrafish DNA sequence from clone CH211-191J22, complete sequence
          Length = 150181

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaagcaaacaaaccagttc 46
             |||||||||||||||||||
Sbjct: 98709 aaagcaaacaaaccagttc 98691

>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
              sequence
          Length = 250531

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     ctcaaaattctagttaatt 78
              |||||||||||||||||||
Sbjct: 234053 ctcaaaattctagttaatt 234035

>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence
          Length = 179954

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 56   aattctcaaaattctagttaatt 78
            |||||||| ||||||||||||||
Sbjct: 6584 aattctcagaattctagttaatt 6606

>gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C15, complete sequence
          Length = 168243

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 56    aattctcaaaattctagtt 74
             |||||||||||||||||||
Sbjct: 87672 aattctcaaaattctagtt 87654

>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    aaagcaaacaaaccagttc 46
             |||||||||||||||||||
Sbjct: 42546 aaagcaaacaaaccagttc 42528

>dbj|AP003781.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-49K4, complete
              sequence
          Length = 177748

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 47     cttacatacaattctcaaaattc 69
              |||||||||||| ||||||||||
Sbjct: 175700 cttacatacaatactcaaaattc 175678

>emb|CT571243.9| Mouse DNA sequence from clone RP23-122I21 on chromosome 9, complete
            sequence
          Length = 158763

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   aaccagttccttacataca 56
            |||||||||||||||||||
Sbjct: 7150 aaccagttccttacataca 7168

>gb|AC171204.1| Mus musculus BAC clone RP23-312J21 from chromosome 9, complete sequence
          Length = 223399

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaccagttccttacataca 56
             |||||||||||||||||||
Sbjct: 51987 aaccagttccttacataca 52005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,430,830
Number of Sequences: 3902068
Number of extensions: 1430830
Number of successful extensions: 116856
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116751
Number of HSP's gapped (non-prelim): 105
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)