>XPC_MOUSE (P51612) DNA-repair protein complementing XP-C cells homolog|
           (Xeroderma pigmentosum group C-complementing protein
           homolog) (p125)
          Length = 930

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +3

Query: 99  DDNGWWLKITRRLQRAKAMMEMTVSQTPRWW*HMIKPYTPLMKRKENMEHETGKKTKLQC 278
           D +GW   +T+R   A             WW   ++PY  L+  +E  E +  +      
Sbjct: 566 DSDGWVRDVTQRYDPAWMTATRKCRVDAEWWAETLRPYRSLLTEREKKEDQEFQAK---- 621

Query: 279 HCSSPSPVTVT 311
           H   P P +++
Sbjct: 622 HLDQPLPTSIS 632

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 194  LPPSRGL*YSHLHHSFGPL*SPGNLQPPSIVISFTLVVYAEMCATNTTP 48
            LPP   L   H HH   P  +PG + PP++ +S    ++  + AT T P
Sbjct: 1109 LPPPPNL---HGHHHHLPF-APGTIPPPNLPVSMANPLHPNLPATTTMP 1153

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 164  HLHHSFGPL*SPGNLQPPSIVISFTLVVYAEMCATNTTP 48
            H HH   P  +PG L PP++ +S    ++  + AT T P
Sbjct: 1117 HGHHHHLPF-APGTLPPPNLPVSMANPLHPNLPATTTMP 1154

>B2MG_ICTPU (O42197) Beta-2-microglobulin precursor|
          Length = 116

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 249 ETGKKTKLQCHCSSPSPVTVTVDLPKNCRMLAPISST 359
           E GK+  L CH S   P  +T+DL KN  ++     T
Sbjct: 35  EFGKENTLICHVSDFHPPDITIDLLKNGEVIPNAEQT 71

>B2MG_BARIN (P55076) Beta-2-microglobulin precursor|
          Length = 116

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 204 KPYTPLMKRKENMEHETGKKTKLQCHCSSPSPVTVTVDLPKNCRMLAPISST 359
           K  +P ++   +   E GK+  L CH S   P  +T++L +N  +L     T
Sbjct: 20  KTSSPKVQVYSHFPGEYGKENTLICHVSGFHPPDITIELLRNGEILPNTQQT 71

>STAG2_MOUSE (O35638) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)|
          Length = 1231

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 199 ICYHHLGVCDTVISIIALA-LCNLLVIFSHHPLS 101
           IC H+L   +T +   A   LC++L+IFSH  +S
Sbjct: 771 ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMS 804

>STAG2_HUMAN (Q8N3U4) Cohesin subunit SA-2 (Stromal antigen 2) (SCC3 homolog 2)|
          Length = 1231

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 199 ICYHHLGVCDTVISIIALA-LCNLLVIFSHHPLS 101
           IC H+L   +T +   A   LC++L+IFSH  +S
Sbjct: 771 ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMS 804

>PHAR1_XENLA (Q6GLU8) Phosphatase and actin regulator 1|
          Length = 586

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = +3

Query: 207 PYTPLMKRKENMEHETGKKTKLQCH---------CSSPSPVTVTVDLPKNCRMLAPISST 359
           PY P   +K +  H T   ++L  H          +  S +++   +P  CR++  ++ T
Sbjct: 275 PYGPYSNQKSSQHHHTVLPSQLAAHQLQYGSQHFSTGSSSISIHPSIPPGCRVIEELNKT 334

Query: 360 V 362
           +
Sbjct: 335 L 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,486,568
Number of Sequences: 219361
Number of extensions: 1270648
Number of successful extensions: 2453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2453
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)