Clone Name | rbastl46d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 93 aaaggagatgacaatggatggtggctgaagattaccaggagattacaaagggccaaagct 152 |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 157658 aaaggagatgacaatgtatggtggctcaagattaccaggagattacaaagggctaaagct 157599 Query: 153 atgatgga 160 || ||||| Sbjct: 157598 atcatgga 157591 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 190 ggtagcatatgatcaaaccctatacacctttgatga 225 |||||||||||||||||||||||||||||||||||| Sbjct: 157554 ggtagcatatgatcaaaccctatacacctttgatga 157519
>gb|AC146524.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055H15, complete sequence Length = 28312 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 93 aaaggagatgacaatggatggtggctgaagattaccaggagattacaaagggccaaagct 152 |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 1983 aaaggagatgacaatgtatggtggctcaagattaccaggagattacaaagggctaaagct 1924 Query: 153 atgatgga 160 || ||||| Sbjct: 1923 atcatgga 1916 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 190 ggtagcatatgatcaaaccctatacacctttgatga 225 |||||||||||||||||||||||||||||||||||| Sbjct: 1879 ggtagcatatgatcaaaccctatacacctttgatga 1844
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 93 aaaggagatgacaatggatggtggctgaagattaccaggagattacaaagggccaaagct 152 |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 7032400 aaaggagatgacaatgtatggtggctcaagattaccaggagattacaaagggctaaagct 7032341 Query: 153 atgatgga 160 || ||||| Sbjct: 7032340 atcatgga 7032333 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 190 ggtagcatatgatcaaaccctatacacctttgatga 225 |||||||||||||||||||||||||||||||||||| Sbjct: 7032296 ggtagcatatgatcaaaccctatacacctttgatga 7032261
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Minus Query: 93 aaaggagatgacaatggatggtggctgaagattaccaggagattacaaagggccaaagct 152 |||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 7098867 aaaggagatgacaatgtatggtggctcaagattaccaggagattacaaagggctaaagct 7098808 Query: 153 atgatgga 160 || ||||| Sbjct: 7098807 atcatgga 7098800 Score = 71.9 bits (36), Expect = 2e-09 Identities = 36/36 (100%) Strand = Plus / Minus Query: 190 ggtagcatatgatcaaaccctatacacctttgatga 225 |||||||||||||||||||||||||||||||||||| Sbjct: 7098763 ggtagcatatgatcaaaccctatacacctttgatga 7098728
>emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chromosome 4 Contains the 5' end of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 172364 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 211 atacacctttgatgaaaagaaaagaaaat 239 |||||| |||||||||||||||||||||| Sbjct: 96917 atacacatttgatgaaaagaaaagaaaat 96889
>emb|AL670670.7| Mouse DNA sequence from clone RP23-234O7 on chromosome X, complete sequence Length = 91811 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 220 tgatgaaaagaaaagaaaatatgg 243 |||||||||||||||||||||||| Sbjct: 49125 tgatgaaaagaaaagaaaatatgg 49102
>dbj|AK028579.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732404A03 product:unclassifiable, full insert sequence Length = 3542 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 tgcctcaagtaatacaaaaagct 46 ||||||||||||||||||||||| Sbjct: 2096 tgcctcaagtaatacaaaaagct 2074
>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete sequence Length = 216238 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 tgcctcaagtaatacaaaaagct 46 ||||||||||||||||||||||| Sbjct: 139553 tgcctcaagtaatacaaaaagct 139575
>gb|AC007256.5| Homo sapiens BAC clone RP11-575C6 from 2, complete sequence Length = 181150 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 317 tctacccaagaactgtagaatg 338 |||||||||||||||||||||| Sbjct: 92939 tctacccaagaactgtagaatg 92918
>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence Length = 152251 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatggaa 245 |||||||||||||||||||||| Sbjct: 148810 gaaaagaaaagaaaatatggaa 148789
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 tgatgaaaagaaaagaaaatat 241 |||||||||||||||||||||| Sbjct: 160950 tgatgaaaagaaaagaaaatat 160929
>emb|AL845520.9| Mouse DNA sequence from clone RP23-283C20 on chromosome 2, complete sequence Length = 103659 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatggaa 245 |||||||||||||||||||||| Sbjct: 97350 gaaaagaaaagaaaatatggaa 97329
>gb|AC123793.5| Mus musculus BAC clone RP24-315L18 from chromosome 1, complete sequence Length = 206081 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 269 gttacaatgtcattgctcttcc 290 |||||||||||||||||||||| Sbjct: 119562 gttacaatgtcattgctcttcc 119541
>gb|AC121542.8| Mus musculus chromosome 15, clone RP24-137J5, complete sequence Length = 164489 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 tgaaaagaaaagaaaatatgg 243 ||||||||||||||||||||| Sbjct: 131053 tgaaaagaaaagaaaatatgg 131033
>gb|AC131999.9| Mus musculus chromosome 15, clone RP24-139E21, complete sequence Length = 214392 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 tgaaaagaaaagaaaatatgg 243 ||||||||||||||||||||| Sbjct: 163290 tgaaaagaaaagaaaatatgg 163310
>ref|NM_017650.2| Homo sapiens protein phosphatase 1, regulatory (inhibitor) subunit 9A (PPP1R9A), mRNA Length = 9705 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgga 244 ||||||||||||||||||||| Sbjct: 7554 gaaaagaaaagaaaatatgga 7534
>gb|AC121276.9| Mus musculus chromosome 1, clone RP24-249B16, complete sequence Length = 212083 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gatgaaaagaaaagaaaatat 241 ||||||||||||||||||||| Sbjct: 115853 gatgaaaagaaaagaaaatat 115873
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 atgaaaagaaaagaaaatatg 242 ||||||||||||||||||||| Sbjct: 10819605 atgaaaagaaaagaaaatatg 10819625
>gb|AC004022.1| Homo sapiens BAC clone GS1-155M11 from 7, complete sequence Length = 116552 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgga 244 ||||||||||||||||||||| Sbjct: 39045 gaaaagaaaagaaaatatgga 39025
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 atgaaaagaaaagaaaatatg 242 ||||||||||||||||||||| Sbjct: 35282 atgaaaagaaaagaaaatatg 35262
>gb|AC105403.2| Mus musculus BAC clone RP24-111L5 from 3, complete sequence Length = 141439 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 atgaaaagaaaagaaaatatg 242 ||||||||||||||||||||| Sbjct: 5599 atgaaaagaaaagaaaatatg 5579
>emb|Z74696.1|HS203C2 Human DNA sequence from clone RP1-203C2 on chromosome X Contains the gene for actin-related protein T1 (ACTRT1), a novel pseudogene, a BTG family member 3 (BTG3) pseudodgene and a actin-related protein pseudogene, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 gatctacccaagaactgtaga 335 ||||||||||||||||||||| Sbjct: 64857 gatctacccaagaactgtaga 64837
>gb|AC093433.2| Homo sapiens chromosome 1 clone RP11-363H12, complete sequence Length = 172613 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatggaacat 248 |||||||||||||||||||| |||| Sbjct: 153509 gaaaagaaaagaaaatatggtacat 153485
>ref|NM_206438.1| Drosophila melanogaster TBP-associated factor 1 CG17603-RB, transcript variant B (Taf1), mRNA Length = 6749 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4263 agcgaaaaggagatgacaatggatg 4287
>ref|NM_206437.1| Drosophila melanogaster TBP-associated factor 1 CG17603-RC, transcript variant C (Taf1), mRNA Length = 6656 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4263 agcgaaaaggagatgacaatggatg 4287
>ref|NM_057608.4| Drosophila melanogaster TBP-associated factor 1 CG17603-RA, transcript variant A (Taf1), mRNA Length = 6557 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4263 agcgaaaaggagatgacaatggatg 4287
>gb|AC095013.1| Drosophila melanogaster, chromosome 3R, region 83F-83F, BAC clone BACR19I14, complete sequence Length = 175648 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 117536 agcgaaaaggagatgacaatggatg 117560
>gb|S61883.1| Drosophila melanogaster transcription factor TFIID 230 kda subunit mRNA, complete cds Length = 6552 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4248 agcgaaaaggagatgacaatggatg 4272
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence Length = 429825 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 404927 agcgaaaaggagatgacaatggatg 404903
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 atgaaaagaaaagaaaatatg 242 ||||||||||||||||||||| Sbjct: 10817706 atgaaaagaaaagaaaatatg 10817726
>gb|AC080075.7| Homo sapiens BAC clone RP11-363J17 from 2, complete sequence Length = 99370 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatggaacat 248 |||||||||||||||||||| |||| Sbjct: 71155 gaaaagaaaagaaaatatggtacat 71131
>gb|AC074117.7| Homo sapiens BAC clone RP11-413M20 from 2, complete sequence Length = 195880 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatggaacat 248 |||||||||||||||||||| |||| Sbjct: 154994 gaaaagaaaagaaaatatggtacat 155018
>gb|BT004888.1| Drosophila melanogaster RE74933 full insert cDNA Length = 6661 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4263 agcgaaaaggagatgacaatggatg 4287
>gb|AC078845.2|AC078845 Homo sapiens chromosome 7 clone RP11-707A19, complete sequence Length = 161514 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatggaacat 248 |||||||||||||||||||| |||| Sbjct: 144723 gaaaagaaaagaaaatatggtacat 144699
>gb|AC117486.3| Homo sapiens 3 BAC CTD-2017P13 (Cal Tech Human BAC Library D) complete sequence Length = 81510 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatggaa 245 ||||||||||||||||||||| Sbjct: 53986 aaaagaaaagaaaatatggaa 54006
>gb|BT024196.1| Drosophila melanogaster RE63802 full insert cDNA Length = 6644 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 4248 agcgaaaaggagatgacaatggatg 4272
>gb|AC009784.2|AC009784 Homo sapiens clone RP11-277F10 from 7q31, complete sequence Length = 165822 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatggaacat 248 |||||||||||||||||||| |||| Sbjct: 147661 gaaaagaaaagaaaatatggtacat 147685
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete sequence Length = 298020 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 171680 agcgaaaaggagatgacaatggatg 171704
>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete sequence Length = 85757 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 agcgtaaaggagatgacaatggatg 112 |||| |||||||||||||||||||| Sbjct: 24899 agcgaaaaggagatgacaatggatg 24923
>gb|AC145743.4| Mus musculus BAC clone RP24-171K11 from 3, complete sequence Length = 174136 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 atgaaaagaaaagaaaatatg 242 ||||||||||||||||||||| Sbjct: 166623 atgaaaagaaaagaaaatatg 166603
>gb|AC140438.3| Mus musculus BAC clone RP24-106N10 from 12, complete sequence Length = 154736 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 ttgatgaaaagaaaagaaaatatgg 243 |||||||||||||||||||| |||| Sbjct: 142988 ttgatgaaaagaaaagaaaacatgg 143012
>emb|CT009764.9| Mouse DNA sequence from clone RP23-173E21 on chromosome 12, complete sequence Length = 214925 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 ttgatgaaaagaaaagaaaatatgg 243 |||||||||||||||||||| |||| Sbjct: 190253 ttgatgaaaagaaaagaaaacatgg 190277
>gb|AC156802.7| Mus musculus BAC clone RP23-119P9 from chromosome 13, complete sequence Length = 209975 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aaagaaaagaaaatatggaa 245 |||||||||||||||||||| Sbjct: 154061 aaagaaaagaaaatatggaa 154042
>gb|AC168882.3| Mus musculus BAC clone RP23-80D1 from chromosome 9, complete sequence Length = 210475 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 135751 gaaaagaaaagaaaatatgg 135770
>gb|AC094830.5| Rattus norvegicus 8 BAC CH230-3H18 (Children's Hospital Oakland Research Institute) complete sequence Length = 237199 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 atgaaaagaaaagaaaatat 241 |||||||||||||||||||| Sbjct: 144365 atgaaaagaaaagaaaatat 144346
>gb|AC145888.3| Pan troglodytes BAC clone RP43-40H8 from 7, complete sequence Length = 163342 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 136681 aaaagaaaagaaaatatgga 136700
>gb|AC110731.10| Mus musculus chromosome 6, clone RP23-433J5, complete sequence Length = 206482 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 102847 aaaagaaaagaaaatatgga 102866
>gb|M38286.1|PFAG2725 Plasmodium falciparum gametocytogenesis onset-specific protein (Pfg 27-25) mRNA, complete cds Length = 794 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 45 aaaagaaaagaaaatatgga 26
>gb|AC145512.33| Medicago truncatula clone mth2-19o18, complete sequence Length = 145524 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 112759 tgatgaaaagaaaagaaaat 112740
>gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete sequence Length = 128535 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 64398 gaaaagaaaagaaaatatgg 64417
>gb|AC113096.12| Mus musculus chromosome 14, clone RP23-312M23, complete sequence Length = 224556 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatggaacat 248 ||||||||||||||||||| |||| Sbjct: 43859 aaaagaaaagaaaatatggtacat 43836
>gb|AC126256.4| Mus musculus BAC clone RP24-235B15 from chromosome 7, complete sequence Length = 188677 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 151848 aaaagaaaagaaaatatgga 151867
>gb|AC124708.2| Mus musculus BAC clone RP24-79O16 from 6, complete sequence Length = 171638 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 52013 tgatgaaaagaaaagaaaat 52032
>gb|AC098727.3| Mus musculus BAC clone RP23-3H16 from 4, complete sequence Length = 231302 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ctttgatgaaaagaaaagaaaata 240 ||||||| |||||||||||||||| Sbjct: 69839 ctttgatcaaaagaaaagaaaata 69816
>gb|AC004859.3| Homo sapiens PAC clone RP4-691F11 from 7, complete sequence Length = 145442 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 33167 gaaaagaaaagaaaatatgg 33186
>ref|XM_724125.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01452) partial mRNA Length = 1992 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttgatgaaaagaaaagaaaatatg 242 ||||||||| |||||||||||||| Sbjct: 184 ttgatgaaaggaaaagaaaatatg 207
>ref|XM_735674.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000117.05.0) partial mRNA Length = 558 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttgatgaaaagaaaagaaaatatg 242 ||||||||| |||||||||||||| Sbjct: 385 ttgatgaaaggaaaagaaaatatg 408
>ref|XM_674764.1| Plasmodium berghei strain ANKA hypothetical protein (PB001080.01.0) partial mRNA Length = 2103 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 ttgatgaaaagaaaagaaaatatg 242 ||||||||| |||||||||||||| Sbjct: 385 ttgatgaaaggaaaagaaaatatg 408
>gb|AC141865.27| Medicago truncatula clone mth2-7b19, complete sequence Length = 117380 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 14809 tgatgaaaagaaaagaaaat 14828
>gb|AC153002.15| Medicago truncatula clone mth2-95m8, complete sequence Length = 112714 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 19672 tgatgaaaagaaaagaaaat 19653
>gb|AC140067.14| Medicago truncatula clone mth2-25n14, complete sequence Length = 116196 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 14807 tgatgaaaagaaaagaaaat 14826
>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23, complete sequence Length = 209342 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tgaaaagaaaagaaaatatg 242 |||||||||||||||||||| Sbjct: 24554 tgaaaagaaaagaaaatatg 24535
>emb|AL590083.8| Human DNA sequence from clone RP11-475D8 on chromosome X Contains a novel gene, the GPR23 gene for G protein-coupled receptor 23 and a 60S ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 127780 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 tttgatgaaaagaaaagaaaatat 241 |||||||||||||||| ||||||| Sbjct: 28806 tttgatgaaaagaaaaaaaaatat 28829
>emb|AL449265.13| Human DNA sequence from clone RP11-485I9 on chromosome X, complete sequence Length = 125282 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatggaaca 247 ||||||||||||||||||| |||| Sbjct: 95959 gaaaagaaaagaaaatatgaaaca 95982
>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG island, complete sequence Length = 174615 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aagtaatacaaaaagctgtg 49 |||||||||||||||||||| Sbjct: 128626 aagtaatacaaaaagctgtg 128607
>emb|CR394534.6| Zebrafish DNA sequence from clone CH211-276A17 in linkage group 6, complete sequence Length = 153370 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 45263 aaaagaaaagaaaatatgga 45282
>emb|X84904.1|PFG27 Plasmodium falciparum encoding Pfg27/25 Length = 2108 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 1344 aaaagaaaagaaaatatgga 1325
>gb|AC122687.2| Homo sapiens 12 BAC RP13-501J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141411 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ctcacatgacaaaattgcct 28 |||||||||||||||||||| Sbjct: 28566 ctcacatgacaaaattgcct 28547
>gb|AC103753.2| Homo sapiens chromosome 15, clone RP11-460N1, complete sequence Length = 179822 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 132378 tgatgaaaagaaaagaaaat 132359
>gb|AC110611.3| Homo sapiens BAC clone RP11-345F18 from 4, complete sequence Length = 195155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 167755 gaaaagaaaagaaaatatgg 167774
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gatgaaaagaaaagaaaata 240 |||||||||||||||||||| Sbjct: 57848 gatgaaaagaaaagaaaata 57829
>gb|AC010406.7| Homo sapiens chromosome 5 clone CTD-2154H6, complete sequence Length = 95089 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gatgaaaagaaaagaaaata 240 |||||||||||||||||||| Sbjct: 55902 gatgaaaagaaaagaaaata 55921
>gb|AC074255.6| Homo sapiens BAC clone RP11-796L2 from 4, complete sequence Length = 135926 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 110576 aaaagaaaagaaaatatgga 110557
>gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complete sequence Length = 217921 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatggaacat 248 ||||||||||||||||||| |||| Sbjct: 214681 aaaagaaaagaaaatatggtacat 214704
>gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 119043 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatggaacat 248 ||||||||||||||||||| |||| Sbjct: 80210 aaaagaaaagaaaatatggtacat 80187
>gb|AC007968.3| Homo sapiens BAC clone RP11-430P16 from 2, complete sequence Length = 144319 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgaaaagaaaagaaaatatg 242 |||||||||||||||||||| Sbjct: 25020 tgaaaagaaaagaaaatatg 25039
>gb|AC105419.2| Homo sapiens BAC clone RP11-502O9 from 2, complete sequence Length = 113552 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 acacctttgatgaaaagaaa 232 |||||||||||||||||||| Sbjct: 75115 acacctttgatgaaaagaaa 75096
>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence Length = 183787 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gatgaaaagaaaagaaaata 240 |||||||||||||||||||| Sbjct: 153420 gatgaaaagaaaagaaaata 153401
>gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, complete sequence Length = 179084 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aaagaaaagaaaatatggaa 245 |||||||||||||||||||| Sbjct: 164697 aaagaaaagaaaatatggaa 164678
>gb|AC010643.5|AC010643 Homo sapiens chromosome 19 clone LLNLR-254A7, complete sequence Length = 38902 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 13284 gaaaagaaaagaaaatatgg 13303
>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence Length = 230823 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 190720 gaaaagaaaagaaaatatgg 190701
>gb|AC153577.2| Mus musculus 6 BAC RP23-373I18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 153953 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 tttgatgaaaagaaaagaaa 237 |||||||||||||||||||| Sbjct: 45072 tttgatgaaaagaaaagaaa 45053
>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete sequence Length = 148751 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 29989 gaaaagaaaagaaaatatgg 29970
>dbj|AP003967.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-183G19, complete sequence Length = 172883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 172301 gaaaagaaaagaaaatatgg 172282
>gb|AC166781.7| Mus musculus chromosome 8, clone RP24-158M8, complete sequence Length = 163096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 tatcacaaacccctagatgg 188 |||||||||||||||||||| Sbjct: 21824 tatcacaaacccctagatgg 21805
>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence Length = 166809 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 68813 aaaagaaaagaaaatatgga 68794
>emb|AL591866.13| Human DNA sequence from clone RP11-58A11 on chromosome 1 Contains the 5' end of two variants of the gene for a novel PH domain-containing protein, the gene for a novel protein, a ribosomal protein L34 (RPL34) pseudogene, the TAS1R1 gene for taste receptor type 1 member 1, the HKR3 gene for GLI-Kruppel family member HKR3, the gene for a novel protein (KIAA0469), the 3' end of the PHF13 gene for PHD finger protein 13 and one CpG island, complete sequence Length = 102539 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 15775 aaaagaaaagaaaatatgga 15794
>gb|AC136215.5| Mus musculus BAC clone RP23-148L8 from 6, complete sequence Length = 167126 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgatgaaaagaaaagaaaat 239 |||||||||||||||||||| Sbjct: 128274 tgatgaaaagaaaagaaaat 128293
>gb|AC149868.2| Mus musculus BAC clone RP23-226I6 from 7, complete sequence Length = 190971 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 aaaagaaaagaaaatatgga 244 |||||||||||||||||||| Sbjct: 93262 aaaagaaaagaaaatatgga 93281
>emb|AL691475.18| Mouse DNA sequence from clone RP23-264P11 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and a CpG island, complete sequence Length = 174567 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 217 ctttgatgaaaagaaaagaaaata 240 ||||||| |||||||||||||||| Sbjct: 108461 ctttgatcaaaagaaaagaaaata 108438
>gb|AC140672.5| Mus musculus BAC clone RP24-208P4 from chromosome 8, complete sequence Length = 212819 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 tatcacaaacccctagatgg 188 |||||||||||||||||||| Sbjct: 129075 tatcacaaacccctagatgg 129094
>dbj|AP004370.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-512I24, complete sequences Length = 193212 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 gaaaagaaaagaaaatatgg 243 |||||||||||||||||||| Sbjct: 71087 gaaaagaaaagaaaatatgg 71068 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,756,118 Number of Sequences: 3902068 Number of extensions: 4756118 Number of successful extensions: 346266 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 345424 Number of HSP's gapped (non-prelim): 842 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)