ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46d09 |
|---|---|
| Clone Library Name | barley_pub |
>MRJP5_APIME (O97432) Major royal jelly protein 5 precursor (MRJP-5) (Bee-milk| protein) Length = 598 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +2 Query: 74 IKLQQSANGMYKNNKVNFGQINAKGRQAVQTDKIHHLDNNDDNQRPHSS 220 +KLQ+ N Y N+VNF + A + + + DN ++NQ H++ Sbjct: 550 MKLQKFINNDYNFNEVNFRILGANVNDLIMNTRCANSDNQNNNQNKHNN 598
>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion| defective protein 3) Length = 1409 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 177 CILSVCTACRPLAFIWPKLTLLFLYMPLAD 88 CILS+ PL +++P + LL YMP A+ Sbjct: 297 CILSIVALLYPLEYMFPVIPLLPAYMPSAE 326
>POCR_SALTY (Q05587) Regulatory protein pocR| Length = 303 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -1 Query: 291 LFVYSQIERDCAHHPSHATYCRARDECGRWLSSLLSRWCI 172 LF ++ + HP H+T CR D CG +S + CI Sbjct: 40 LFNFTPFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCI 79
>PAR1_MOUSE (P30558) Proteinase-activated receptor 1 precursor (PAR-1)| (Thrombin receptor) Length = 430 Score = 28.9 bits (63), Expect = 3.3 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = -2 Query: 308 LAGAVYCLFIVKL--REIVLIIHLMLRTVGRG---------MSVGVGCRHCCRDGVFCRF 162 L+ AV+C+FIV ++LI+H + + G + V V CC D + + Sbjct: 319 LSAAVFCIFIVCFGPTNVLLIVHYLFLSDSPGTEAAYFAYLLCVCVSSVSCCIDPLIYYY 378 Query: 161 VQLVVPWHLFGRS*LCC 111 HL+ S LCC Sbjct: 379 ASSECQRHLY--SILCC 393
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +1 Query: 100 HVQKQQSQLRPNKCQGTTSCTNRQNTPSRQQ*RQPTP 210 H++ Q+SQ P+ +T+ R +TPS Q P P Sbjct: 130 HIKSQESQHTPHSMTPSTATAPRSSTPSHGQTPAPEP 166
>VPS41_YEAST (P38959) Vacuolar assembly protein VPS41 (Vacuolar morphogenesis| protein VAM2) Length = 992 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = +3 Query: 246 MDDEHNLSQFDYKQTVHSASQSTNLTA 326 MDD N++Q+D+K+ ++S + +N A Sbjct: 182 MDDPQNITQYDFKRPINSVALHSNFQA 208
>MYO7A_MOUSE (P97479) Myosin-7A (Myosin VIIa)| Length = 2215 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = -1 Query: 285 VYSQIERDCAHHPSHATYCRARDECGRWLSSLLSRWCILSVCTAC 151 +Y QI + H+PS ++Y R W ++S+C C Sbjct: 1171 IYCQISKQLTHNPSKSSYARG--------------WILVSLCVGC 1201
>MYO7A_HUMAN (Q13402) Myosin-7A (Myosin VIIa)| Length = 2215 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/45 (26%), Positives = 20/45 (44%) Frame = -1 Query: 285 VYSQIERDCAHHPSHATYCRARDECGRWLSSLLSRWCILSVCTAC 151 +Y QI + H+PS ++Y R W ++S+C C Sbjct: 1171 IYCQISKQLTHNPSKSSYARG--------------WILVSLCVGC 1201
>COX19_CANAL (Q5AL10) Cytochrome c oxidase assembly protein COX19| Length = 133 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +2 Query: 74 IKLQQSANGMYKNNKVNFGQINAKGRQAVQTDKIHHLDNNDD--NQRPHSSRARQYVA 241 +K + M K++ + G +N G V+ D HHL+NN+ + + SS + Q +A Sbjct: 62 LKCRMDNQLMEKSDWDSLGLVNLPGENDVELDHHHHLNNNNTKADGKSGSSNSNQNLA 119
>PLCB3_RAT (Q99JE6) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +1 Query: 64 AILNQVATIS*RHVQKQQSQLRPNKCQGTTSCTNRQNTPSRQQ*RQPTPTLIPRPTVRSM 243 A++N + +S + +Q + + S Q TPS+QQ Q + +P P S Sbjct: 857 ALINPIKHVSLMDQRAKQLAALIGESEAQASTEMCQETPSQQQGSQLSSNPVPNPLDDSP 916 Query: 244 RW 249 RW Sbjct: 917 RW 918
>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG| Length = 931 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 100 HVQKQQSQLRPNKCQGTTSCTNRQNTPSRQQ*RQPTPTLIPRPT 231 H Q+QQ Q + + Q ++ PS+QQ +Q TP +PT Sbjct: 135 HQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQQQPT 178
>LCB2_CRIGR (O54694) Serine palmitoyltransferase 2 (EC 2.3.1.50) (Long chain| base biosynthesis protein 2) (LCB 2) (Serine-palmitoyl-CoA transferase 2) (SPT 2) Length = 560 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +2 Query: 92 ANGMYKNNKVNFGQINAKGRQAVQTDKIHHLDNN 193 ANG KN +V G + + A +IHH+ N Sbjct: 16 ANGCVKNGEVRNGYVRSSTATAAAAGQIHHVTEN 49
>SPY3_HUMAN (O43610) Sprouty homolog 3 (Spry-3)| Length = 288 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/49 (32%), Positives = 19/49 (38%) Frame = -1 Query: 276 QIERDCAHHPSHATYCRARDECGRWLSSLLSRWCILSVCTACRPLAFIW 130 + E+ H H C +ECGR C CTA RPL W Sbjct: 132 EAEQSAGHPSEHLFIC---EECGR---------CKCVPCTAARPLPSCW 168
>PACC_ASPGI (Q5XL24) pH-response transcription factor pacC/RIM101| Length = 678 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = +1 Query: 88 IS*RHVQKQQSQLRPNKCQGTTSCTNRQNTPSRQQ*RQPTPTLIPRPTVRSMRWMMSTIS 267 +S R SQL P+ TTS + P+ TP L P + +S S IS Sbjct: 384 MSYRTTHSPPSQLPPSHATATTSAATMMSHPATHSPSTGTPALTPPSSAQSYTSGRSPIS 443 Query: 268 LN 273 ++ Sbjct: 444 MS 445
>PACC_ASPFU (Q4WY67) pH-response transcription factor pacC/RIM101| Length = 676 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/62 (27%), Positives = 27/62 (43%) Frame = +1 Query: 88 IS*RHVQKQQSQLRPNKCQGTTSCTNRQNTPSRQQ*RQPTPTLIPRPTVRSMRWMMSTIS 267 +S R +QL P+ TTS + + P+ TP L P + +S S IS Sbjct: 381 MSYRTTHSPPTQLPPSHAVATTSASTSMSNPATHSPPTGTPALTPPSSAQSYTSARSPIS 440 Query: 268 LN 273 ++ Sbjct: 441 IS 442
>SRP54_PYRHO (O59307) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 224 RGMSVGVGCRHCCRDGVFCRFVQLVVPWHL 135 RG VGV C R G + + QL+ P+H+ Sbjct: 127 RGYKVGVVCSDTWRPGAYHQLKQLLDPYHI 156
>SRP54_PYRAB (Q9V1E8) Signal recognition 54 kDa protein (SRP54)| Length = 443 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 224 RGMSVGVGCRHCCRDGVFCRFVQLVVPWHL 135 RG VGV C R G + + QL+ P+H+ Sbjct: 127 RGYKVGVVCSDTWRPGAYHQLKQLLDPYHI 156
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +1 Query: 40 KYAHNNTSAILNQVATIS*RHVQKQQSQLRPNKCQG 147 K +N ILNQV+T+ V K Q N C G Sbjct: 89 KLLSDNVHTILNQVSTLRETFVNKVQKYKEKNACHG 124
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Frame = +1 Query: 97 RHVQKQQSQLRPNKCQGTTSCTNRQNTP---SRQQ*RQPTPTLIPRPTVRSMRWMMSTIS 267 R + + L+ K G TS R +P SR +P P PR + S+ Sbjct: 2820 RSLSPNHNTLQTLKSDGRTSSGFRAESPGPGSRSSSPKPKPLPTPRSSPSGASSPRSSSP 2879 Query: 268 LNLTINKQYTAPASQQI*PP 327 + + ++ TAPA ++ PP Sbjct: 2880 QDKNLPQKSTAPAKTKLDPP 2899
>MATK_CALVU (O47143) Maturase K (Intron maturase)| Length = 506 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = -1 Query: 330 EWRLNLLTGWRCVLFVYSQIERDCAHHPSH 241 +W+ L+ W+C +++SQ +R C + S+ Sbjct: 297 KWKYYLVNFWQCYFYMWSQPKRICINQLSN 326
>PRE3_STALE (Q5DU99) Plasmid recombination enzyme type 3 (Plasmid recombinase)| (Mobilization protein) Length = 413 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 14/51 (27%) Frame = +2 Query: 113 NKVNFGQI-------NAKGRQAVQTDKIHHLD-----NND--DNQRPHSSR 223 NK NF + N G++ ++TD I H+D +ND DNQ P ++ Sbjct: 51 NKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTK 101
>PRE3_STAES (Q8CUG0) Plasmid recombination enzyme type 3 (Plasmid recombinase)| (Mobilization protein) Length = 413 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 14/51 (27%) Frame = +2 Query: 113 NKVNFGQI-------NAKGRQAVQTDKIHHLD-----NND--DNQRPHSSR 223 NK NF + N G++ ++TD I H+D +ND DNQ P ++ Sbjct: 51 NKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTK 101
>PRE3_STAAU (P03864) Plasmid recombination enzyme type 3 (Plasmid recombinase)| (Mobilization protein) Length = 413 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 14/51 (27%) Frame = +2 Query: 113 NKVNFGQI-------NAKGRQAVQTDKIHHLD-----NND--DNQRPHSSR 223 NK NF + N G++ ++TD I H+D +ND DNQ P ++ Sbjct: 51 NKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTK 101
>PRE3_STAAC (Q5HJZ6) Plasmid recombination enzyme type 3 (Plasmid recombinase)| (Mobilization protein) Length = 413 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 14/51 (27%) Frame = +2 Query: 113 NKVNFGQI-------NAKGRQAVQTDKIHHLD-----NND--DNQRPHSSR 223 NK NF + N G++ ++TD I H+D +ND DNQ P ++ Sbjct: 51 NKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTK 101
>SYR_STRR6 (Q8DN69) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 92 ANGMYKNNKVNFGQINAKGRQAVQTDKIHHLDNNDDNQ 205 A G Y N ++ I+A+ QAV T+K H+ D N Q Sbjct: 74 ATGPYVNFFLDKSAISAQVLQAVTTEKEHYADQNIGKQ 111
>SYR_STRPN (Q54869) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 92 ANGMYKNNKVNFGQINAKGRQAVQTDKIHHLDNNDDNQ 205 A G Y N ++ I+A+ QAV T+K H+ D N Q Sbjct: 74 ATGPYVNFFLDKSAISAQVLQAVTTEKEHYADQNIGKQ 111 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,614,921 Number of Sequences: 219361 Number of extensions: 815009 Number of successful extensions: 2368 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2287 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2365 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
