ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_479734.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
2ref|XM_507093.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.1
3emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chrom... 42 1.1
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
6dbj|AK106557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
7dbj|AK102080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
8gb|AC009214.8| Drosophila melanogaster clone BACR05E09, complete... 40 4.4
9gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosom... 40 4.4
10gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chrom... 40 4.4
11gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45... 40 4.4
12gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, compl... 40 4.4

>ref|XM_479734.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2952

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  tctcaatttgactataaacaa 287
            |||||||||||||||||||||
Sbjct: 2720 tctcaatttgactataaacaa 2700



to top

>ref|XM_507093.1| PREDICTED Oryza sativa (japonica cultivar-group), P0007D08.34 mRNA
          Length = 2953

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  tctcaatttgactataaacaa 287
            |||||||||||||||||||||
Sbjct: 2721 tctcaatttgactataaacaa 2701



to top

>emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chromosome X, complete
             sequence
          Length = 129422

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    gcatgtacaaaaacaacaaag 119
             |||||||||||||||||||||
Sbjct: 78570 gcatgtacaaaaacaacaaag 78590



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    tctcaatttgactataaacaa 287
              |||||||||||||||||||||
Sbjct: 550342 tctcaatttgactataaacaa 550322



to top

>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    tctcaatttgactataaacaa 287
              |||||||||||||||||||||
Sbjct: 140302 tctcaatttgactataaacaa 140282



to top

>dbj|AK106557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-109-A01, full
            insert sequence
          Length = 2952

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  tctcaatttgactataaacaa 287
            |||||||||||||||||||||
Sbjct: 2720 tctcaatttgactataaacaa 2700



to top

>dbj|AK102080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082K05, full
            insert sequence
          Length = 2953

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  tctcaatttgactataaacaa 287
            |||||||||||||||||||||
Sbjct: 2721 tctcaatttgactataaacaa 2701



to top

>gb|AC009214.8| Drosophila melanogaster clone BACR05E09, complete sequence
          Length = 154772

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    tcaatttgactataaacaaacagt 292
              |||||||||||||||||| |||||
Sbjct: 102045 tcaatttgactataaacagacagt 102022



to top

>gb|AC150314.5| Mus musculus BAC clone RP23-269O24 from chromosome 10, complete sequence
          Length = 243006

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    ataaacaaacagtacacagc 299
              ||||||||||||||||||||
Sbjct: 102206 ataaacaaacagtacacagc 102225



to top

>gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chromosome unknown,
             complete sequence
          Length = 197895

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    taatacatcagcaatcctga 73
             ||||||||||||||||||||
Sbjct: 31203 taatacatcagcaatcctga 31184



to top

>gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45 of 83 of the complete
             sequence
          Length = 246231

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 269   tcaatttgactataaacaaacagt 292
             |||||||||||||||||| |||||
Sbjct: 84302 tcaatttgactataaacagacagt 84325



to top

>gb|AC140787.4| Mus musculus BAC clone RP23-411H17 from 10, complete sequence
          Length = 217336

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ataaacaaacagtacacagc 299
             ||||||||||||||||||||
Sbjct: 45924 ataaacaaacagtacacagc 45905


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,080,035
Number of Sequences: 3902068
Number of extensions: 3080035
Number of successful extensions: 58763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58714
Number of HSP's gapped (non-prelim): 49
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top