ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full... 385 e-104
2gb|AY109428.1| Zea mays CL501_1 mRNA sequence 66 1e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
4gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare str... 58 3e-05
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
6dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
7dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
8dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
10gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, comple... 44 0.41
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
12dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
13dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
14emb|AL831783.4| Mouse DNA sequence from clone RP23-201L10 on chr... 44 0.41
15emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, ... 42 1.6
16emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BA... 42 1.6
17gb|AC008126.9|AC008126 Homo sapiens 12 BAC RPCI11-90E9 (Roswell ... 42 1.6
18gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, comple... 42 1.6
19emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chr... 42 1.6
20gb|AF229450.1| Danio rerio jagged2 (jag2) mRNA, complete cds, al... 40 6.4
21gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete se... 40 6.4
22gb|AC145615.3| Homo sapiens BAC clone RP11-1217H2 from UL, compl... 40 6.4
23gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, com... 40 6.4
24gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosom... 40 6.4
25gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome... 40 6.4
26gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosom... 40 6.4
27emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, comple... 40 6.4
28gb|AC127536.5| Homo sapiens chromosome 15, clone RP11-1181H2, co... 40 6.4
29emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 i... 40 6.4
30emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on ch... 40 6.4
31emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chro... 40 6.4
32gb|AF229449.1| Danio rerio jagged2 (jag2) mRNA, complete cds, al... 40 6.4
33emb|AL049695.20|HSJ236J16 Human DNA sequence from clone RP1-236J... 40 6.4
34emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G1... 40 6.4
35gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integr... 40 6.4
36emb|CR933104.2| Medicago truncatula chromosome 5 clone mth2-25b3... 40 6.4
37emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 6.4
38gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 gen... 40 6.4
39emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 ... 40 6.4
40gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chrom... 40 6.4
41gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct... 40 6.4
42gb|AC106047.5| Homo sapiens BAC clone RP11-293A21 from 4, comple... 40 6.4
43gb|AC092342.3| Homo sapiens chromosome 16 clone RP11-264M14, com... 40 6.4
44dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 6.4
45gb|AC095347.6| Homo sapiens 12 BAC RP11-413D8 (Roswell Park Canc... 40 6.4
46gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, comp... 40 6.4
47gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's H... 40 6.4
48gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome... 40 6.4
49gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, co... 40 6.4
50gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-... 40 6.4
51tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gen... 40 6.4
52gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9... 40 6.4
53dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
54gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, comp... 40 6.4
55gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, co... 40 6.4
56gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, comple... 40 6.4
57gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complet... 40 6.4
58gb|AC140890.2| Homo sapiens chromosome 16 clone RP11-188D24, com... 40 6.4
59ref|NM_131665.1| Danio rerio jagged 2 (jag2), transcript variant... 40 6.4
60ref|NM_131862.1| Danio rerio jagged 2 (jag2), transcript variant... 40 6.4
61emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chro... 40 6.4
62emb|BX248319.5| Zebrafish DNA sequence from clone CH211-218O3 in... 40 6.4
63gb|AC136877.2| Homo sapiens chromosome 16 clone RP11-1258I11, co... 40 6.4
64gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, co... 40 6.4
65gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence 40 6.4
66gb|AC006928.15|AC006928 Homo sapiens chromosome 4 clone C0440E08... 40 6.4
67dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
68emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 i... 40 6.4
69emb|BX004766.9| Zebrafish DNA sequence from clone DKEY-5P1 in li... 40 6.4
70emb|AL954868.6| Zebrafish DNA sequence from clone CH211-254N4 in... 40 6.4
71emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 6.4
72gb|AF090432.1|AF090432 Danio rerio serrateB mRNA, complete cds 40 6.4
73emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in... 40 6.4
74gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
75gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, comple... 40 6.4
76emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chrom... 40 6.4 
>gb|BT009089.1| Triticum aestivum clone wkm2c.pk0002.a3:fis, full insert mRNA
           sequence
          Length = 774

 Score =  385 bits (194), Expect = e-104
 Identities = 286/315 (90%), Gaps = 5/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 158 gatatacaatttatgcggcacaaaatgtccaggatgagtatccctaga---aaattctga 214
           ||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||
Sbjct: 695 gatatacaatttatgcggcacaaaatgtccaggttgagtatccctagaggaaaattctga 636

                                                                       
Query: 215 aaccaagaaactaacagcttaaatacggtaaagtagaagtaacacaataacaacacaata 274
           ||||||||||||||||| ||||||||||| |  ||  ||| | |||||||||||||||||
Sbjct: 635 aaccaagaaactaacagtttaaatacggtgatctaatagttatacaataacaacacaata 576

                                                                       
Query: 275 caattcacactaacttccatgaaacagcacagctgt--atgctcataactgaataatttt 332
           ||||||||||||||||||||| ||||||||  ||||  ||||||||||| ||||||||||
Sbjct: 575 caattcacactaacttccatggaacagcacgcctgtgtatgctcataaccgaataatttt 516

                                                                       
Query: 333 gacggaatatccatccttaagttacccgtcacttacttgataagagactccatagcttca 392
           ||||||||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 515 gacggaataccgatcttcaagtttcccgtcacttaattgataagagactccatagcttca 456

                                                                       
Query: 393 aagaatagaggcacaaactccctgtttggagtcttcactgcacactctgcaccaggagca 452
           ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| ||
Sbjct: 455 aagaatagaggcacaaactccctgtttggagtcttgactgcacacttggcaccaggaaca 396

                          
Query: 453 ccaacggcagcagta 467
           ||||| |||||||||
Sbjct: 395 ccaacagcagcagta 381



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 92  aaagaaacaaggtgtattttcatgtactatgacatagcaagaaaaa 137
           |||||||||||  |||||||||||| ||||||||||||||||||||
Sbjct: 752 aaagaaacaagaagtattttcatgtgctatgacatagcaagaaaaa 707
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>gb|AY109428.1| Zea mays CL501_1 mRNA sequence
          Length = 3187

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                       
Query: 375 agagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgca 434
           |||| |||||||||||||||||| ||||| || | |||||| ||||| || || ||||||
Sbjct: 356 agagcctccatagcttcaaagaagagaggaaccatctccctatttggtgttttgactgca 415

                                        
Query: 435 cactctgcaccaggagcaccaacggcagc 463
           ||||   |||||||| ||||||| |||||
Sbjct: 416 cacttcacaccaggaacaccaaccgcagc 444
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 367      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13561552 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13561611

                                                         
Query: 427      tcactgcacactctgcaccaggagcaccaacggcagcagta 467
                | || |||||||   | |||||| |||| || |||||||||
Sbjct: 13561612 tgaccgcacacttcacgccaggaacaccgactgcagcagta 13561652
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>gb|AC137073.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0005A11, from chromosome 3, complete sequence
          Length = 168219

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                          
Query: 367    acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
              |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 121443 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 121502

                                                       
Query: 427    tcactgcacactctgcaccaggagcaccaacggcagcagta 467
              | || |||||||   | |||||| |||| || |||||||||
Sbjct: 121503 tgaccgcacacttcacgccaggaacaccgactgcagcagta 121543
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 367      acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
                |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 13557427 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 13557486

                                                         
Query: 427      tcactgcacactctgcaccaggagcaccaacggcagcagta 467
                | || |||||||   | |||||| |||| || |||||||||
Sbjct: 13557487 tgaccgcacacttcacgccaggaacaccgactgcagcagta 13557527
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>dbj|AK071247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087B10, full
            insert sequence
          Length = 1904

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 367  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1728 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1669

                                                     
Query: 427  tcactgcacactctgcaccaggagcaccaacggcagcagta 467
            | || |||||||   | |||||| |||| || |||||||||
Sbjct: 1668 tgaccgcacacttcacgccaggaacaccgactgcagcagta 1628
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>dbj|AK069084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007F10, full
            insert sequence
          Length = 1842

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 367  acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
            |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 1479 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 1420

                                                     
Query: 427  tcactgcacactctgcaccaggagcaccaacggcagcagta 467
            | || |||||||   | |||||| |||| || |||||||||
Sbjct: 1419 tgaccgcacacttcacgccaggaacaccgactgcagcagta 1379
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>dbj|AK059077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A07, full
           insert sequence
          Length = 834

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 367 acttgataagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtct 426
           |||||| |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| |
Sbjct: 546 acttgagaagagactccatggcttcgaagaagagagccaccatctccttgtttggagttt 487

                                                    
Query: 427 tcactgcacactctgcaccaggagcaccaacggcagcagta 467
           | || |||||||   | |||||| |||| || |||||||||
Sbjct: 486 tgaccgcacacttcacgccaggaacaccgactgcagcagta 446
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>dbj|AK068938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D19, full
            insert sequence
          Length = 2979

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 374  aagagactccatagcttcaaagaatagaggcacaaactccctgtttggagtcttcactgc 433
            |||||||||||| ||||| ||||| |||| ||| | |||| |||||||||| || || ||
Sbjct: 2706 aagagactccatggcttcgaagaagagagccaccatctccttgtttggagttttgaccgc 2647

                                              
Query: 434  acactctgcaccaggagcaccaacggcagcagta 467
            |||||   | |||||| |||| || |||||||||
Sbjct: 2646 acacttcacgccaggaacaccgactgcagcagta 2613
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>gb|AC073133.9| Homo sapiens BAC clone RP11-691F21 from 7, complete sequence
          Length = 95280

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 314   ctcataactgaataattttgac 335
             ||||||||||||||||||||||
Sbjct: 57533 ctcataactgaataattttgac 57512
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 180     aaatgtccaggatgagtatccc 201
               ||||||||||||||||||||||
Sbjct: 7266918 aaatgtccaggatgagtatccc 7266897
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>dbj|AP004736.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OSJNBa0062A09
          Length = 173541

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 180 aaatgtccaggatgagtatccc 201
           ||||||||||||||||||||||
Sbjct: 881 aaatgtccaggatgagtatccc 860
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>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1381_H04
          Length = 130961

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 180    aaatgtccaggatgagtatccc 201
              ||||||||||||||||||||||
Sbjct: 119023 aaatgtccaggatgagtatccc 119002
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>emb|AL831783.4| Mouse DNA sequence from clone RP23-201L10 on chromosome 2, complete
              sequence
          Length = 112198

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 425    cttcactgcacactctgcacca 446
              ||||||||||||||||||||||
Sbjct: 100899 cttcactgcacactctgcacca 100878
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>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54
          Length = 198715

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 261    ataacaacacaatacaattca 281
              |||||||||||||||||||||
Sbjct: 188407 ataacaacacaatacaattca 188427
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>emb|AL031187.1|ATT6K22 Arabidopsis thaliana DNA chromosome 4, BAC clone T6K22 (ESSAII project)
          Length = 89219

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   ataacaacacaatacaattca 281
             |||||||||||||||||||||
Sbjct: 45130 ataacaacacaatacaattca 45150
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>gb|AC008126.9|AC008126 Homo sapiens 12 BAC RPCI11-90E9 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 173545

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    tataaaatagaaacaatatta 39
             |||||||||||||||||||||
Sbjct: 27131 tataaaatagaaacaatatta 27151
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>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence
          Length = 167471

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     aaagaaacaaggtgtattttc 112
              |||||||||||||||||||||
Sbjct: 150588 aaagaaacaaggtgtattttc 150568
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>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
             sequence
          Length = 206914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   aaaggcaagatatacaattta 170
             |||||||||||||||||||||
Sbjct: 50133 aaaggcaagatatacaattta 50153
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>gb|AF229450.1| Danio rerio jagged2 (jag2) mRNA, complete cds, alternatively spliced
          Length = 5355

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  aggagcaccaacggcagcagtagc 469
            |||||||||| |||||||||||||
Sbjct: 3667 aggagcaccagcggcagcagtagc 3690
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>gb|AC171267.17| Medicago truncatula clone mth2-17i7, complete sequence
          Length = 108819

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ataaaatagaaacaatatta 39
              ||||||||||||||||||||
Sbjct: 105780 ataaaatagaaacaatatta 105799
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>gb|AC145615.3| Homo sapiens BAC clone RP11-1217H2 from UL, complete sequence
          Length = 207889

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 72280 tgtattttcatgtactatga 72261
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>gb|AC142384.2| Homo sapiens chromosome 16 clone RP11-293B20, complete sequence
          Length = 182907

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 63090 tgtattttcatgtactatga 63109
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>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete
             sequence
          Length = 147109

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tattacatgtgtattgcctc 54
             ||||||||||||||||||||
Sbjct: 91740 tattacatgtgtattgcctc 91721
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>gb|AC127314.4| Mus musculus BAC clone RP23-217N4 from chromosome 18, complete sequence
          Length = 232320

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    aataacaacacaatacaatt 279
              ||||||||||||||||||||
Sbjct: 151220 aataacaacacaatacaatt 151239
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>gb|AC129179.3| Mus musculus BAC clone RP23-240C24 from chromosome 18, complete sequence
          Length = 208462

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    aataacaacacaatacaatt 279
              ||||||||||||||||||||
Sbjct: 196667 aataacaacacaatacaatt 196648
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>emb|Z70306.1|CEC06G8 Caenorhabditis elegans Cosmid C06G8, complete sequence
          Length = 31143

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   aattctgaaaccaagaaact 226
             ||||||||||||||||||||
Sbjct: 26630 aattctgaaaccaagaaact 26611
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>gb|AC127536.5| Homo sapiens chromosome 15, clone RP11-1181H2, complete sequence
          Length = 168996

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 94366 tgtattttcatgtactatga 94385
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>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   tagaagtaacacaataacaa 267
             ||||||||||||||||||||
Sbjct: 80485 tagaagtaacacaataacaa 80504
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>emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on chromosome 1 Contains the 5'
              end of the CAPZB gene for capping protein (actin filament)
              muscle Z-line, beta, complete sequence
          Length = 148290

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     tcaaatcaaaaagaaacaag 102
              ||||||||||||||||||||
Sbjct: 105993 tcaaatcaaaaagaaacaag 105974
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>emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chromosome 13, complete
             sequence
          Length = 129575

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 148   tcaaaggcaagatatacaatttat 171
             ||||||||||||| ||||||||||
Sbjct: 29688 tcaaaggcaagatttacaatttat 29711
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>gb|AF229449.1| Danio rerio jagged2 (jag2) mRNA, complete cds, alternatively spliced
          Length = 5469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  aggagcaccaacggcagcagtagc 469
            |||||||||| |||||||||||||
Sbjct: 3781 aggagcaccagcggcagcagtagc 3804
to top
>emb|AL049695.20|HSJ236J16 Human DNA sequence from clone RP1-236J16 on chromosome 6q21-22.1
             Contains a cytokine inducible SH2-containing protein 6
             (CISH6) pseudogene, complete sequence
          Length = 106348

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    atagaaacaatattacatgt 44
             ||||||||||||||||||||
Sbjct: 99669 atagaaacaatattacatgt 99688
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>emb|AL078462.9|HSJ159G19 Human DNA sequence from clone RP1-159G19 on chromosome 6q14.1-14.3
             Contains the 3' part of a novel gene, complete sequence
          Length = 88509

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 251   aagtaacacaataacaacacaata 274
             |||||||||||||| |||||||||
Sbjct: 22962 aagtaacacaataataacacaata 22939
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>gb|AF517750.1| Mus musculus chromosome 18 NFS107 proviral integration site
          Length = 1655

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 aataacaacacaatacaatt 279
           ||||||||||||||||||||
Sbjct: 52  aataacaacacaatacaatt 71
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>emb|CR933104.2| Medicago truncatula chromosome 5 clone mth2-25b3, COMPLETE SEQUENCE
          Length = 117135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     agctcatatggtataaaata 27
             ||||||||||||||||||||
Sbjct: 85043 agctcatatggtataaaata 85062
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    caaggtgtattttcatgtac 118
             ||||||||||||||||||||
Sbjct: 17568 caaggtgtattttcatgtac 17549
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>gb|AC068951.18| Oryza sativa chromosome 10 BAC OSJNBa0042E19 genomic sequence, complete
              sequence
          Length = 149978

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 367    acttgataagagactccatagcttcaaagaatagag 402
              |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 109697 acttgagaagagactccatggcttcgaagaagagag 109662
to top
>emb|BX324007.16| Zebrafish DNA sequence from clone CH211-233C16 in linkage group 16,
              complete sequence
          Length = 165294

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    gtaaagtagaagtaacacaa 261
              ||||||||||||||||||||
Sbjct: 116674 gtaaagtagaagtaacacaa 116693
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>gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chromosome 16, complete
             sequence
          Length = 158303

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 18422 tgtattttcatgtactatga 18403
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>gb|AC079439.26| Mus musculus strain 129/Sv chromosome 2 clone ct7-295g23, complete
             sequence
          Length = 115747

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttccatgaaacagcacagct 308
             ||||||||||||||||||||
Sbjct: 33060 ttccatgaaacagcacagct 33041
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>gb|AC106047.5| Homo sapiens BAC clone RP11-293A21 from 4, complete sequence
          Length = 175918

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      atagctcatatggtataaaa 25
              ||||||||||||||||||||
Sbjct: 173954 atagctcatatggtataaaa 173935
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>gb|AC092342.3| Homo sapiens chromosome 16 clone RP11-264M14, complete sequence
          Length = 170324

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 68873 tgtattttcatgtactatga 68854
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>dbj|AK136716.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230028P05 product:unclassifiable, full
           insert sequence
          Length = 1057

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 289 ttccatgaaacagcacagct 308
           ||||||||||||||||||||
Sbjct: 543 ttccatgaaacagcacagct 562
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>gb|AC095347.6| Homo sapiens 12 BAC RP11-413D8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 91600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aaaaagaaacaaggtgtatt 109
             ||||||||||||||||||||
Sbjct: 83298 aaaaagaaacaaggtgtatt 83317
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>gb|AC034242.6| Homo sapiens chromosome 5 clone CTD-2514M18, complete sequence
          Length = 221452

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 99979 tgtattttcatgtactatga 99960
to top
>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ctagaaaattctgaaaccaa 220
             ||||||||||||||||||||
Sbjct: 16993 ctagaaaattctgaaaccaa 17012
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>gb|AC154501.2| Mus musculus BAC clone RP24-87F14 from chromosome 14, complete sequence
          Length = 215658

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 258   acaataacaacacaatacaattca 281
             |||||||||||| |||||||||||
Sbjct: 47726 acaataacaacaaaatacaattca 47749
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>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence
          Length = 207351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tattacatgtgtattgcctc 54
             ||||||||||||||||||||
Sbjct: 79717 tattacatgtgtattgcctc 79698
to top
>gb|AF298202.1| Dictyostelium discoideum putative transposon DDT-B, complete
           sequence
          Length = 5471

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 aacacaataacaacacaata 274
           ||||||||||||||||||||
Sbjct: 797 aacacaataacaacacaata 778



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 aacacaataacaacacaata 274
           ||||||||||||||||||||
Sbjct: 752 aacacaataacaacacaata 733
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>tpg|BK001437.1| TPA: TPA_exp: Homo sapiens SULT6B1 (SULT6B1) gene, complete cds;
             alternatively spliced
          Length = 34001

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   atgctcataactgaataatt 330
             ||||||||||||||||||||
Sbjct: 22591 atgctcataactgaataatt 22610
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>gb|AC017067.4|AC017067 Homo sapiens BAC clone RP11-370B11 from 9, complete sequence
          Length = 191373

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aaaattctgaaaccaagaaa 224
             ||||||||||||||||||||
Sbjct: 33949 aaaattctgaaaccaagaaa 33968
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 367      acttgataagagactccatagcttcaaagaatagag 402
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16491598 acttgagaagagactccatggcttcgaagaagagag 16491563
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>gb|AC139476.3| Homo sapiens chromosome 16 clone RP11-341P6, complete sequence
          Length = 189057

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    tgtattttcatgtactatga 123
              ||||||||||||||||||||
Sbjct: 167515 tgtattttcatgtactatga 167496
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>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tattacatgtgtattgcctc 54
             ||||||||||||||||||||
Sbjct: 97279 tattacatgtgtattgcctc 97260
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>gb|AC007899.3| Homo sapiens BAC clone RP11-531C11 from 2, complete sequence
          Length = 118195

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   atgctcataactgaataatt 330
             ||||||||||||||||||||
Sbjct: 13587 atgctcataactgaataatt 13606
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>gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complete sequence
          Length = 175554

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   actgcacactctgcaccagg 448
             ||||||||||||||||||||
Sbjct: 53888 actgcacactctgcaccagg 53907
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>gb|AC140890.2| Homo sapiens chromosome 16 clone RP11-188D24, complete sequence
          Length = 172153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 23558 tgtattttcatgtactatga 23539
to top
>ref|NM_131665.1| Danio rerio jagged 2 (jag2), transcript variant 2, mRNA
          Length = 5138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  aggagcaccaacggcagcagtagc 469
            |||||||||| |||||||||||||
Sbjct: 3764 aggagcaccagcggcagcagtagc 3787
to top
>ref|NM_131862.1| Danio rerio jagged 2 (jag2), transcript variant 1, mRNA
          Length = 5469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  aggagcaccaacggcagcagtagc 469
            |||||||||| |||||||||||||
Sbjct: 3781 aggagcaccagcggcagcagtagc 3804
to top
>emb|BX901906.3| Mouse DNA sequence from clone RP23-328F9 on chromosome 2, complete
             sequence
          Length = 213629

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttccatgaaacagcacagct 308
             ||||||||||||||||||||
Sbjct: 57543 ttccatgaaacagcacagct 57524
to top
>emb|BX248319.5| Zebrafish DNA sequence from clone CH211-218O3 in linkage group 8,
             complete sequence
          Length = 193173

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aaaatagaaacaatattaca 41
             ||||||||||||||||||||
Sbjct: 44570 aaaatagaaacaatattaca 44551
to top
>gb|AC136877.2| Homo sapiens chromosome 16 clone RP11-1258I11, complete sequence
          Length = 180454

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgtattttcatgtactatga 123
             ||||||||||||||||||||
Sbjct: 77086 tgtattttcatgtactatga 77067
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>gb|AC113458.10| Mus musculus chromosome 3, clone RP23-372O21, complete sequence
          Length = 232529

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    agaggcacaaactccctgtt 418
              ||||||||||||||||||||
Sbjct: 146507 agaggcacaaactccctgtt 146488
to top
>gb|AC002462.1|AC002462 Human BAC clone CTA-210I4, complete sequence
          Length = 100258

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    aaaaagaaacaaggtgtatt 109
             ||||||||||||||||||||
Sbjct: 98032 aaaaagaaacaaggtgtatt 98013
to top
>gb|AC006928.15|AC006928 Homo sapiens chromosome 4 clone C0440E08, complete sequence
          Length = 169468

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      atagctcatatggtataaaa 25
              ||||||||||||||||||||
Sbjct: 169433 atagctcatatggtataaaa 169452
to top
>dbj|AK066946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089G05, full
           insert sequence
          Length = 575

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 367 acttgataagagactccatagcttcaaagaatagag 402
           |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 399 acttgagaagagactccatggcttcgaagaagagag 364
to top
>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    acaataacaacacaatacaa 277
              ||||||||||||||||||||
Sbjct: 126271 acaataacaacacaatacaa 126290
to top
>emb|BX004766.9| Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20,
             complete sequence
          Length = 214782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 446   aggagcaccaacggcagcagtagc 469
             |||||||||| |||||||||||||
Sbjct: 22644 aggagcaccagcggcagcagtagc 22621
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>emb|AL954868.6| Zebrafish DNA sequence from clone CH211-254N4 in linkage group 8,
             complete sequence
          Length = 194224

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    aaaatagaaacaatattaca 41
             ||||||||||||||||||||
Sbjct: 45431 aaaatagaaacaatattaca 45450
to top
>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tagaggcacaaactccctgt 417
             ||||||||||||||||||||
Sbjct: 98529 tagaggcacaaactccctgt 98548
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>gb|AF090432.1|AF090432 Danio rerio serrateB mRNA, complete cds
          Length = 5138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 446  aggagcaccaacggcagcagtagc 469
            |||||||||| |||||||||||||
Sbjct: 3764 aggagcaccagcggcagcagtagc 3787
to top
>emb|BX004808.5| Zebrafish DNA sequence from clone CH211-51B23 in linkage group 16,
             complete sequence
          Length = 184760

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gtaaagtagaagtaacacaa 261
             ||||||||||||||||||||
Sbjct: 47402 gtaaagtagaagtaacacaa 47383



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   gtaaagtagaagtaacacaa 261
             ||||||||||||||||||||
Sbjct: 46938 gtaaagtagaagtaacacaa 46919
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 367      acttgataagagactccatagcttcaaagaatagag 402
                |||||| |||||||||||| ||||| ||||| ||||
Sbjct: 16499839 acttgagaagagactccatggcttcgaagaagagag 16499804
to top
>gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, complete sequence
          Length = 195405

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     caaaaagaaacaaggtgtattttc 112
              |||||||||||||| |||||||||
Sbjct: 123637 caaaaagaaacaagttgtattttc 123660
to top
>emb|AL844146.2| Mouse DNA sequence from clone RP24-89J1 on chromosome 2, complete
             sequence
          Length = 233417

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   ttccatgaaacagcacagct 308
             ||||||||||||||||||||
Sbjct: 85626 ttccatgaaacagcacagct 85645


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,181,561
Number of Sequences: 3902068
Number of extensions: 5181561
Number of successful extensions: 112225
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111879
Number of HSP's gapped (non-prelim): 343
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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