>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 59  GTTNSRISPPPHLQQASTDKTGTLYVITHPLNS 157
           GT +  ++P PHL   ST +T    + THPL S
Sbjct: 571 GTHHPALTPGPHLLAGSTSQTPLPTINTHPLTS 603

>DDX18_MOUSE (Q8K363) ATP-dependent RNA helicase DDX18 (EC 3.6.1.-) (DEAD box|
           protein 18)
          Length = 660

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/77 (23%), Positives = 36/77 (46%)
 Frame = -2

Query: 252 GCFGKLLAGSLQSLVFSARARSLVCFESRKLTELSGCVITYSVPVLSVEACCKCGGGDIL 73
           G F      SL +LV     +++     +++TE+    I   +    + A  K G G  L
Sbjct: 162 GAFEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTL 221

Query: 72  LFVVPIIRVNIEIRAFP 22
            F++P+I + ++++  P
Sbjct: 222 AFLIPVIELIVKLKFMP 238

>LYAM2_PIG (P98110) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 484

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 301 MPSCENPFCSSLLDPIGLLRKAFSGLSSEPCI*CTCTFAC 182
           +PSC+   CSSL  P    R+     S EP     CTFAC
Sbjct: 358 VPSCQVVQCSSLEVP----REINMSCSGEPVFGAVCTFAC 393

>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C) (Thyroid receptor-interacting protein 8)
           (TRIP-8)
          Length = 2540

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 59  GTTNSRISPPPHLQQASTDKTGTLYVITHPLNS 157
           GT +  ++P PHL   S+ +T    + THPL S
Sbjct: 752 GTHHPALTPAPHLLAGSSSQTPLPTINTHPLTS 784

>LYAM2_HORSE (Q95LG1) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 610

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 301 MPSCENPFCSSLLDPIGLLRKAFSGLSSEPCI*CTCTFAC 182
           +PSC+   C+SL  P     K     S EP     CTFAC
Sbjct: 484 VPSCQVVQCASLAVP----GKVSMSCSGEPVFGAVCTFAC 519

>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)|
          Length = 2214

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = +2

Query: 20  FGKARISIFTLMIGTTNSRISPPPHLQQASTDKTG----TLYVITHPLNSVSFLDSKQTS 187
           FGK  +S  TL        ++ PP      T++TG     LY+ + P++     D+K T 
Sbjct: 477 FGKPAVSTVTLEHQKELENVAQPPQAPHQPTERTGRSEMVLYIQSEPVSQ----DAKPTG 532

Query: 188 ERARALNTRL*REPAKSFPKQPNRIQ 265
               A   R  R  + S    P ++Q
Sbjct: 533 HNREASKKRKVRTRSLSDFTGPPQLQ 558

>DBP4_YEAST (P20448) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-) (DEAD box|
           protein 4) (Helicase CA4) (Helicase UF1)
          Length = 770

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 165 KLTELSGCVITYSVPVLSVEACCKCGGGDILLFVVPII 52
           KLTE+    I  S+    V A  K G G  L F+VP+I
Sbjct: 63  KLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

>RINT1_DROME (Q9VS46) RINT1-like protein (DmRINT-1)|
          Length = 724

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 403 P*SNPRGHQPMALPVSIALWVNLLPSFCGVKFSSMPSCENPFCSSLLDP 257
           P S P     +  P+ +  W++L   FC  K   +   E PF   L+DP
Sbjct: 373 PASFPSAISVITQPMYLLRWISLEERFCAEKMDDILQAETPF--QLIDP 419

>EF2_DEBHA (Q6BJ25) Elongation factor 2 (EF-2)|
          Length = 842

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   IRILIDIWKSTYLNIYSYDWYNKQQDITASTFTTGFN 111
           I+++  +W  +Y N  +  W NK +D    T    FN
Sbjct: 238 IKMMERLWGDSYFNPKTKKWTNKDKDAEGKTLERAFN 274

>POT15_HUMAN (Q6S5H4) Prostate, ovary, testis expressed protein on chromosome 15|
          Length = 581

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 222 ESPLKAFRSNPIGSSKDEQKGFSQDGIDENLTPQNEGRR 338
           E  +K   SNP+G  ++   G S    D+ L PQ + R+
Sbjct: 416 EEEIKKHGSNPVGLPENLTNGASAGNGDDGLIPQRKSRK 454

>OPHN1_MOUSE (Q99J31) Oligophrenin 1|
          Length = 802

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 228 PLKAFRSNPIGSSKDEQKGFSQDG 299
           PL+ FR   IG +K+ +K F +DG
Sbjct: 115 PLETFRKEQIGFTKERKKKFEKDG 138

>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)|
            (Seizure-related protein 4)
          Length = 3122

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 346  REQCLQAKPWVDDPADWIRASTQLFPGMIQK 438
            R+ C + K  V D + WIRAST L P + +K
Sbjct: 1698 RQSCSEEKHHVSDSSPWIRAST-LNPELFEK 1727


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,795,489
Number of Sequences: 219361
Number of extensions: 1349407
Number of successful extensions: 3602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3602
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)