Clone Name | rbastl46d05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | JHD3C_MOUSE (Q8VCD7) JmjC domain-containing histone demethylatio... | 29 | 4.8 | 2 | CSN12_YARLI (Q6C1L4) COP9 signalosome complex subunit 12 | 29 | 4.8 |
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>JHD3C_MOUSE (Q8VCD7) JmjC domain-containing histone demethylation protein 3C| (EC 1.14.11.-) (Jumonji domain-containing protein 2C) Length = 1054 Score = 29.3 bits (64), Expect = 4.8 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 371 LFKSHLFHVEFLRECLDLDDEVRETASWTQGMIN 270 L K + E L E L +D+EV ET SW + +I+ Sbjct: 584 LVKQQVASDEELPEVLSIDEEVEETESWAKPLIH 617
>CSN12_YARLI (Q6C1L4) COP9 signalosome complex subunit 12| Length = 396 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = -2 Query: 449 RDESVTKAAVAVLGDLADTLGPISKDLFKSHLFHVEFLRECLDL-DDEVRETASWTQGMI 273 R +++K+ + V+ ++ L P++ +SH + R L L DD+V + +W + Sbjct: 173 RKRNMSKSVIKVVESMSRDLPPLAS-YPRSHTCTYSYYRGVLSLMDDDVEQAQNWLTQAL 231 Query: 272 NQAIVS*TRN 243 NQ T N Sbjct: 232 NQCFYKSTDN 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,121,226 Number of Sequences: 219361 Number of extensions: 1332204 Number of successful extensions: 3534 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 3478 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3534 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)