>YKG3_CAEEL (P46553) Hypothetical protein B0285.3|
          Length = 166

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +3

Query: 237 GSGKQN----RTRHTQNLPKGRGDGASAGKGVGPLDA 335
           G G QN    R R      +GRG G    K  GP+DA
Sbjct: 83  GGGNQNNYGNRGRGRGGFDRGRGGGGGGNKNFGPIDA 119

>GLNA_ASHGO (Q75BT9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 369

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 222 HTRNRGSGKQNRTRHTQNLPKGRGDGASAGKGVG 323
           H R++G   Q R      LP+   DG+S G+  G
Sbjct: 35  HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPG 68

>CLPX_BORPE (Q7VXI6) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 434

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  YMDRYLLGQTSPIYVCSVKAYIESNHNKML 145
           ++D+Y++GQTSP  + +V  Y   NH K +
Sbjct: 73  FLDQYVIGQTSPKRMLAVAVY---NHYKRI 99

>CLPX_BORPA (Q7W8X1) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 434

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  YMDRYLLGQTSPIYVCSVKAYIESNHNKML 145
           ++D+Y++GQTSP  + +V  Y   NH K +
Sbjct: 73  FLDQYVIGQTSPKRMLAVAVY---NHYKRI 99

>CLPX_BORBR (Q7WK82) ATP-dependent Clp protease ATP-binding subunit clpX|
          Length = 434

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 56  YMDRYLLGQTSPIYVCSVKAYIESNHNKML 145
           ++D+Y++GQTSP  + +V  Y   NH K +
Sbjct: 73  FLDQYVIGQTSPKRMLAVAVY---NHYKRI 99

>FOXP1_HUMAN (Q9H334) Forkhead box protein P1|
          Length = 677

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 237 GSGKQNRTRHTQNLPKGRGDGASAGKGVGPLDAAHA 344
           GSG  N       L +GR +G +    +G  D AHA
Sbjct: 19  GSGGSNHLLECGGLREGRSNGETPAVDIGAADLAHA 54

>Y2664_MYCBO (P59975) UPF0027 protein Mb2664|
          Length = 432

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 CTLIHTRNRGSGKQNRTRHTQNLPKGRG 293
           C +IHT +RG G Q  T H + + +  G
Sbjct: 189 CVMIHTGSRGLGHQICTDHVRQMEQAMG 216

>Y2631_MYCTU (P71930) UPF0027 protein Rv2631/MT2707|
          Length = 432

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 210 CTLIHTRNRGSGKQNRTRHTQNLPKGRG 293
           C +IHT +RG G Q  T H + + +  G
Sbjct: 189 CVMIHTGSRGLGHQICTDHVRQMEQAMG 216

>FEM2_CAEEL (P49594) Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC|
           3.1.3.16) (CaM-kinase phosphatase) (CaMKPase)
           (Sex-determining protein fem-2) (Feminization of XX and
           XO animals protein 2)
          Length = 449

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 8   QKTKEQRKYIAYAGGRYMDR 67
           Q+ K++ +++AY  G+YMDR
Sbjct: 171 QRHKQEDRFLAYPNGQYMDR 190

>K0310_HUMAN (O15027) Protein KIAA0310|
          Length = 2179

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 216 LIHTRNRGSGKQNRTRHTQNLPKGRGDGASAGKGVGPLDA 335
           L++   RG   +NRT H          GA AG G  PL+A
Sbjct: 155 LVNPLARGDSPENRTHHPL--------GAGAGSGCAPLEA 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,454,509
Number of Sequences: 219361
Number of extensions: 866249
Number of successful extensions: 3022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)