ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA... 33 0.38
2YKKA_CAEEL (Q95QY7) Putative zinc finger protein C02F5.12 31 1.1
3CUL5_CAEEL (Q23639) Cullin-5 30 3.2
4GPA17_CAEEL (Q18434) Guanine nucleotide-binding protein alpha-17... 28 9.4
5GPA17_CAEBR (Q86FX7) Guanine nucleotide-binding protein alpha-17... 28 9.4
6EGFL7_HUMAN (Q9UHF1) EGF-like domain-containing protein 7 precur... 28 9.4

>UL52_EBV (P03193) Helicase/primase complex protein (Probable DNA replication|
           protein BSLF1)
          Length = 874

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 77  FCCHDNIDEILMLTSIHPYSQHIQKLTTPPTSCIGTEASYSDQMA--PTRYVQNSRADE 247
           F CH       ++T+  P+S H+ ++ + PT+C   +   +  ++  P  Y QNS +++
Sbjct: 424 FLCHFADRHYFVMTAADPFSSHLAEVVSTPTNCRLPDTCLTRALSYTPVYYSQNSLSEQ 482



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>YKKA_CAEEL (Q95QY7) Putative zinc finger protein C02F5.12|
          Length = 380

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 122 IHPYSQHIQKLTTPPTSC 175
           IHP +Q IQK  TPPTSC
Sbjct: 43  IHPPAQKIQKPATPPTSC 60



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>CUL5_CAEEL (Q23639) Cullin-5|
          Length = 741

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 303 VISWADDRPL-VENDLHRCLKQIIRRASSSFRTVEAYGRGTLG 428
           + SW DD PL + + L RC+   +  A+   R+++  G   +G
Sbjct: 38  ITSWVDDGPLKIRDILTRCINDYVHEANKRIRSLQTDGSLLIG 80



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>GPA17_CAEEL (Q18434) Guanine nucleotide-binding protein alpha-17 subunit|
           (Odorant response abnormal protein 3)
          Length = 356

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 44  IGGTHSHAGTRFCCHDNIDEILMLTSIHPYSQ 139
           +GG  S       C DN++ I+ +T+I  Y Q
Sbjct: 203 VGGQRSERRKWIHCFDNVESIIFITAISEYDQ 234



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>GPA17_CAEBR (Q86FX7) Guanine nucleotide-binding protein alpha-17 subunit|
           (Odorant response abnormal protein 3)
          Length = 356

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 44  IGGTHSHAGTRFCCHDNIDEILMLTSIHPYSQ 139
           +GG  S       C DN++ I+ +T+I  Y Q
Sbjct: 203 VGGQRSERRKWIHCFDNVESIIFITAISEYDQ 234



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>EGFL7_HUMAN (Q9UHF1) EGF-like domain-containing protein 7 precursor (Multiple|
           EGF-like domain protein 7) (Multiple epidermal growth
           factor-like domain protein 7) (Vascular endothelial
           statin) (VE-statin) (NOTCH4-like protein) (ZNEU1)
          Length = 273

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 276 CPASFPVETCSSAREFCTYRVGAI*SL*DASVPMQLVGGVVSF-CMCWE 133
           CPA +  +TC S  + C+ R G          P + V    S+ C CWE
Sbjct: 125 CPAGWRGDTCQSDVDECSARRG--------GCPQRCVNTAGSYWCQCWE 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,516,758
Number of Sequences: 219361
Number of extensions: 1208731
Number of successful extensions: 2620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2619
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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