ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM087608.1| Hordeum vulgare tpase gene for transposase-relat... 850 0.0
2emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on ch... 44 0.37
3gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold 42 1.5
4gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete s... 42 1.5
5gb|AC159013.2| Gallus gallus BAC clone CH261-33A3 from chromosom... 42 1.5
6gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 42 1.5
7ref|NM_001017942.1| Bos taurus arginase, type II (ARG2), mRNA 40 5.8
8gb|DQ217840.1| Oryctolagus cuniculus mitochondrial arginase 2 mR... 40 5.8
9gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.8
10emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23... 40 5.8
11ref|XM_566840.1| Cryptococcus neoformans var. neoformans JEC21 c... 40 5.8
12emb|CT009494.4| Mouse DNA sequence from clone RP23-125D7 on chro... 40 5.8
13ref|XM_861741.1| PREDICTED: Canis familiaris similar to Arginase... 40 5.8
14ref|XM_861729.1| PREDICTED: Canis familiaris similar to Arginase... 40 5.8
15ref|XM_537488.2| PREDICTED: Canis familiaris similar to Arginase... 40 5.8
16ref|XM_861704.1| PREDICTED: Canis familiaris similar to Arginase... 40 5.8
17ref|XM_861689.1| PREDICTED: Canis familiaris similar to Arginase... 40 5.8
18gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, compl... 40 5.8
19gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete... 40 5.8
20gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete se... 40 5.8
21emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chr... 40 5.8
22gb|AY864853.1| Oryctolagus cuniculus mitochondrial arginase type... 40 5.8
23gb|AF225206.1|AF225206 Kluyveromyces marxianus alcohol dehydroge... 40 5.8
24gb|BT021586.1| Bos taurus arginase, type II (ARG2), nuclear gene... 40 5.8
25gb|AY880424.1| Gekko japonicus GekBS193P mRNA, complete cds 40 5.8
26gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome... 40 5.8
27gb|AC137938.12| Mus musculus chromosome 5, clone RP24-365C2, com... 40 5.8
28gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome ... 40 5.8
29emb|AL645645.14| Mouse DNA sequence from clone RP23-153G17 on ch... 40 5.8

>emb|AM087608.1| Hordeum vulgare tpase gene for transposase-related protein b-gary,
            exons 1-4
          Length = 8190

 Score =  850 bits (429), Expect = 0.0
 Identities = 432/433 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gggctttaattctcagactgggctgagctattattagccattgataggcggcacacacag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5050 gggctttaattctcagactgggctgagctattattagccattgataggcggcacacacag 4991

                                                                        
Query: 61   ccacgctggaactcgcttctgctgtcatgacaatattgatgagattcttatgctgacatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4990 ccacgctggaactcgcttctgctgtcatgacaatattgatgagattcttatgctgacatc 4931

                                                                        
Query: 121  aatacacccatattcccagcacatacagaaactcacaactccgcctactagctgcatagg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4930 aatacacccatattcccagcacatacagaaactcacaactccgcctactagctgcatagg 4871

                                                                        
Query: 181  cactgaggcgtcttacagcgatcaaatggcaccgactcgatatgtacaaaactcacgcgc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4870 cactgaggcgtcttacagcgatcaaatggcaccgactcgatatgtacaaaactcacgcgc 4811

                                                                        
Query: 241  tgatgaacatgtctccacaggaaaggaagcagggcatgtcaacagcagccaccaaactcg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4810 tgatgaacatgtctccacaggaaaggaagcagggcatgtcaacagcagccaccaaactcg 4751

                                                                        
Query: 301  tcgtcatcagctgggctgacgaccggcctttggtcgaaaacgacctacacagatgtctga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4750 tcgtcatcagctgggctgacgaccggcctttggtcgaaaacgacctacacagatgtctga 4691

                                                                        
Query: 361  aacaaatcatacgccgggcatcttcatcgttcaggactgtagaagcatatggcagaggta 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4690 aacaaatcatacgccgggcatcttcatcgttcaggactgtagaagcatatggcagaggta 4631

                         
Query: 421  cattagggccaga 433
            |||| ||||||||
Sbjct: 4630 cattggggccaga 4618



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>emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on chromosome 1 Contains the 5'
              end of the SPATA6 gene for spermatogenesis associated 6, an
              amyotrophic lateral sclerosis 2 (juvenile) chromosome
              region, candidate 2 (ALS2CR2) pseudogene, a ribosomal
              protein L21 (RPL21) pseudogene and a CpG island, complete
              sequence
          Length = 173373

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 124    acacccatattcccagcacata 145
              ||||||||||||||||||||||
Sbjct: 122242 acacccatattcccagcacata 122263



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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   atgaacatgtctccacaggaa 263
             |||||||||||||||||||||
Sbjct: 35811 atgaacatgtctccacaggaa 35831



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>gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete sequence
          Length = 197172

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   atgaacatgtctccacaggaa 263
             |||||||||||||||||||||
Sbjct: 35811 atgaacatgtctccacaggaa 35831



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>gb|AC159013.2| Gallus gallus BAC clone CH261-33A3 from chromosome unknown, complete
              sequence
          Length = 166005

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    tgagattcttatgctgacatcaata 124
              ||||||||| |||||||||||||||
Sbjct: 147319 tgagattctgatgctgacatcaata 147295



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>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
              sequence
          Length = 267345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 100    tgagattcttatgctgacatcaata 124
              ||||||||| |||||||||||||||
Sbjct: 141193 tgagattctgatgctgacatcaata 141169



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>ref|NM_001017942.1| Bos taurus arginase, type II (ARG2), mRNA
          Length = 1423

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 525 atgctgacatcaatacaccc 544



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>gb|DQ217840.1| Oryctolagus cuniculus mitochondrial arginase 2 mRNA, partial cds;
           nuclear gene for mitochondrial product
          Length = 475

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 133 atgctgacatcaatacaccc 152



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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     cagatgtctgaaacaaatca 369
               ||||||||||||||||||||
Sbjct: 1406828 cagatgtctgaaacaaatca 1406809



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>emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23 on chromosome 3,
              complete sequence
          Length = 129215

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    agaagcatatggcagaggta 420
              ||||||||||||||||||||
Sbjct: 100825 agaagcatatggcagaggta 100844



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>ref|XM_566840.1| Cryptococcus neoformans var. neoformans JEC21 chitin synthase 6
            (CNA05300) partial mRNA
          Length = 3958

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  cagatgtctgaaacaaatca 369
            ||||||||||||||||||||
Sbjct: 1287 cagatgtctgaaacaaatca 1268



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>emb|CT009494.4| Mouse DNA sequence from clone RP23-125D7 on chromosome 13, complete
              sequence
          Length = 206416

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     atgacaatattgatgagatt 106
              ||||||||||||||||||||
Sbjct: 191429 atgacaatattgatgagatt 191410



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>ref|XM_861741.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial
           precursor (Non-hepatic arginase) (Kidney-type arginase),
           transcript variant 5 (LOC480364), mRNA
          Length = 1423

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 442 atgctgacatcaatacaccc 461



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>ref|XM_861729.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial
           precursor (Non-hepatic arginase) (Kidney-type arginase),
           transcript variant 4 (LOC480364), mRNA
          Length = 1351

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 442 atgctgacatcaatacaccc 461



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>ref|XM_537488.2| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial
           precursor (Non-hepatic arginase) (Kidney-type arginase),
           transcript variant 1 (LOC480364), mRNA
          Length = 1372

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 451 atgctgacatcaatacaccc 470



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>ref|XM_861704.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial
           precursor (Non-hepatic arginase) (Kidney-type arginase),
           transcript variant 3 (LOC480364), mRNA
          Length = 732

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 442 atgctgacatcaatacaccc 461



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>ref|XM_861689.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial
           precursor (Non-hepatic arginase) (Kidney-type arginase),
           transcript variant 2 (LOC480364), mRNA
          Length = 1436

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 451 atgctgacatcaatacaccc 470



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>gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, complete sequence
          Length = 200110

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     atgacaatattgatgagatt 106
              ||||||||||||||||||||
Sbjct: 118967 atgacaatattgatgagatt 118948



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>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   aaggaagcagggcatgtcaacagc 286
             |||||||||||| |||||||||||
Sbjct: 39086 aaggaagcagggaatgtcaacagc 39109



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>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
          Length = 132702

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   agaagcatatggcagaggta 420
             ||||||||||||||||||||
Sbjct: 63891 agaagcatatggcagaggta 63872



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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
             alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
             end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 182653

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   cacagatgtctgaaacaaat 367
             ||||||||||||||||||||
Sbjct: 71435 cacagatgtctgaaacaaat 71416



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>gb|AY864853.1| Oryctolagus cuniculus mitochondrial arginase type II mRNA, complete
           cds; nuclear gene for mitochondrial product
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 434 atgctgacatcaatacaccc 453



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>gb|AF225206.1|AF225206 Kluyveromyces marxianus alcohol dehydrogenase II (ADH2), ribosomal
            protein S9 (MRPS9), Yol087C protein (YOL087C), RNA
            polymerase subunit (RPB5), and riboflavin biosynthesis
            protein (RIB7) genes, complete cds; and U4/U6.U5
            snRNP-associated protein (SPP381) gene, partial cds
          Length = 11472

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 286  cagccaccaaactcgtcgtcatca 309
            |||||||||||||| |||||||||
Sbjct: 7402 cagccaccaaactcttcgtcatca 7425



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>gb|BT021586.1| Bos taurus arginase, type II (ARG2), nuclear gene encoding
           mitochondrial protein, mRNA, complete cds
          Length = 1423

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 525 atgctgacatcaatacaccc 544



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>gb|AY880424.1| Gekko japonicus GekBS193P mRNA, complete cds
          Length = 1067

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 atgctgacatcaatacaccc 129
           ||||||||||||||||||||
Sbjct: 139 atgctgacatcaatacaccc 158



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>gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome 14, complete sequence
          Length = 238300

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ggcacacacagccacgctgg 69
              ||||||||||||||||||||
Sbjct: 233775 ggcacacacagccacgctgg 233756



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>gb|AC137938.12| Mus musculus chromosome 5, clone RP24-365C2, complete sequence
          Length = 151679

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    gagctattattagccattga 44
             ||||||||||||||||||||
Sbjct: 95960 gagctattattagccattga 95979



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>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence
          Length = 244795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ggcacacacagccacgctgg 69
              ||||||||||||||||||||
Sbjct: 141466 ggcacacacagccacgctgg 141447



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>emb|AL645645.14| Mouse DNA sequence from clone RP23-153G17 on chromosome 4, complete
             sequence
          Length = 70734

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   cacaggaaaggaagcagggc 275
             ||||||||||||||||||||
Sbjct: 50341 cacaggaaaggaagcagggc 50322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,410,568
Number of Sequences: 3902068
Number of extensions: 3410568
Number of successful extensions: 57640
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57587
Number of HSP's gapped (non-prelim): 53
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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