Clone Name | rbastl46c09 |
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Clone Library Name | barley_pub |
>emb|AM087608.1| Hordeum vulgare tpase gene for transposase-related protein b-gary, exons 1-4 Length = 8190 Score = 850 bits (429), Expect = 0.0 Identities = 432/433 (99%) Strand = Plus / Minus Query: 1 gggctttaattctcagactgggctgagctattattagccattgataggcggcacacacag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5050 gggctttaattctcagactgggctgagctattattagccattgataggcggcacacacag 4991 Query: 61 ccacgctggaactcgcttctgctgtcatgacaatattgatgagattcttatgctgacatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4990 ccacgctggaactcgcttctgctgtcatgacaatattgatgagattcttatgctgacatc 4931 Query: 121 aatacacccatattcccagcacatacagaaactcacaactccgcctactagctgcatagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4930 aatacacccatattcccagcacatacagaaactcacaactccgcctactagctgcatagg 4871 Query: 181 cactgaggcgtcttacagcgatcaaatggcaccgactcgatatgtacaaaactcacgcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4870 cactgaggcgtcttacagcgatcaaatggcaccgactcgatatgtacaaaactcacgcgc 4811 Query: 241 tgatgaacatgtctccacaggaaaggaagcagggcatgtcaacagcagccaccaaactcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4810 tgatgaacatgtctccacaggaaaggaagcagggcatgtcaacagcagccaccaaactcg 4751 Query: 301 tcgtcatcagctgggctgacgaccggcctttggtcgaaaacgacctacacagatgtctga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4750 tcgtcatcagctgggctgacgaccggcctttggtcgaaaacgacctacacagatgtctga 4691 Query: 361 aacaaatcatacgccgggcatcttcatcgttcaggactgtagaagcatatggcagaggta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4690 aacaaatcatacgccgggcatcttcatcgttcaggactgtagaagcatatggcagaggta 4631 Query: 421 cattagggccaga 433 |||| |||||||| Sbjct: 4630 cattggggccaga 4618
>emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on chromosome 1 Contains the 5' end of the SPATA6 gene for spermatogenesis associated 6, an amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene, a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 173373 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 124 acacccatattcccagcacata 145 |||||||||||||||||||||| Sbjct: 122242 acacccatattcccagcacata 122263
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 atgaacatgtctccacaggaa 263 ||||||||||||||||||||| Sbjct: 35811 atgaacatgtctccacaggaa 35831
>gb|AC146315.3| Otolemur garnettii clone CH256-282O14, complete sequence Length = 197172 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 atgaacatgtctccacaggaa 263 ||||||||||||||||||||| Sbjct: 35811 atgaacatgtctccacaggaa 35831
>gb|AC159013.2| Gallus gallus BAC clone CH261-33A3 from chromosome unknown, complete sequence Length = 166005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 tgagattcttatgctgacatcaata 124 ||||||||| ||||||||||||||| Sbjct: 147319 tgagattctgatgctgacatcaata 147295
>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete sequence Length = 267345 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 tgagattcttatgctgacatcaata 124 ||||||||| ||||||||||||||| Sbjct: 141193 tgagattctgatgctgacatcaata 141169
>ref|NM_001017942.1| Bos taurus arginase, type II (ARG2), mRNA Length = 1423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 525 atgctgacatcaatacaccc 544
>gb|DQ217840.1| Oryctolagus cuniculus mitochondrial arginase 2 mRNA, partial cds; nuclear gene for mitochondrial product Length = 475 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 133 atgctgacatcaatacaccc 152
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cagatgtctgaaacaaatca 369 |||||||||||||||||||| Sbjct: 1406828 cagatgtctgaaacaaatca 1406809
>emb|CT009528.9| M.truncatula DNA sequence from clone MTH2-168J23 on chromosome 3, complete sequence Length = 129215 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 agaagcatatggcagaggta 420 |||||||||||||||||||| Sbjct: 100825 agaagcatatggcagaggta 100844
>ref|XM_566840.1| Cryptococcus neoformans var. neoformans JEC21 chitin synthase 6 (CNA05300) partial mRNA Length = 3958 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 cagatgtctgaaacaaatca 369 |||||||||||||||||||| Sbjct: 1287 cagatgtctgaaacaaatca 1268
>emb|CT009494.4| Mouse DNA sequence from clone RP23-125D7 on chromosome 13, complete sequence Length = 206416 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 atgacaatattgatgagatt 106 |||||||||||||||||||| Sbjct: 191429 atgacaatattgatgagatt 191410
>ref|XM_861741.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial precursor (Non-hepatic arginase) (Kidney-type arginase), transcript variant 5 (LOC480364), mRNA Length = 1423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 442 atgctgacatcaatacaccc 461
>ref|XM_861729.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial precursor (Non-hepatic arginase) (Kidney-type arginase), transcript variant 4 (LOC480364), mRNA Length = 1351 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 442 atgctgacatcaatacaccc 461
>ref|XM_537488.2| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial precursor (Non-hepatic arginase) (Kidney-type arginase), transcript variant 1 (LOC480364), mRNA Length = 1372 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 451 atgctgacatcaatacaccc 470
>ref|XM_861704.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial precursor (Non-hepatic arginase) (Kidney-type arginase), transcript variant 3 (LOC480364), mRNA Length = 732 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 442 atgctgacatcaatacaccc 461
>ref|XM_861689.1| PREDICTED: Canis familiaris similar to Arginase II, mitochondrial precursor (Non-hepatic arginase) (Kidney-type arginase), transcript variant 2 (LOC480364), mRNA Length = 1436 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 451 atgctgacatcaatacaccc 470
>gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, complete sequence Length = 200110 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 atgacaatattgatgagatt 106 |||||||||||||||||||| Sbjct: 118967 atgacaatattgatgagatt 118948
>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence Length = 234053 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 aaggaagcagggcatgtcaacagc 286 |||||||||||| ||||||||||| Sbjct: 39086 aaggaagcagggaatgtcaacagc 39109
>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence Length = 132702 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 agaagcatatggcagaggta 420 |||||||||||||||||||| Sbjct: 63891 agaagcatatggcagaggta 63872
>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 182653 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cacagatgtctgaaacaaat 367 |||||||||||||||||||| Sbjct: 71435 cacagatgtctgaaacaaat 71416
>gb|AY864853.1| Oryctolagus cuniculus mitochondrial arginase type II mRNA, complete cds; nuclear gene for mitochondrial product Length = 1130 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 434 atgctgacatcaatacaccc 453
>gb|AF225206.1|AF225206 Kluyveromyces marxianus alcohol dehydrogenase II (ADH2), ribosomal protein S9 (MRPS9), Yol087C protein (YOL087C), RNA polymerase subunit (RPB5), and riboflavin biosynthesis protein (RIB7) genes, complete cds; and U4/U6.U5 snRNP-associated protein (SPP381) gene, partial cds Length = 11472 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 cagccaccaaactcgtcgtcatca 309 |||||||||||||| ||||||||| Sbjct: 7402 cagccaccaaactcttcgtcatca 7425
>gb|BT021586.1| Bos taurus arginase, type II (ARG2), nuclear gene encoding mitochondrial protein, mRNA, complete cds Length = 1423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 525 atgctgacatcaatacaccc 544
>gb|AY880424.1| Gekko japonicus GekBS193P mRNA, complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atgctgacatcaatacaccc 129 |||||||||||||||||||| Sbjct: 139 atgctgacatcaatacaccc 158
>gb|AC174647.2| Mus musculus BAC clone RP23-25C24 from chromosome 14, complete sequence Length = 238300 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ggcacacacagccacgctgg 69 |||||||||||||||||||| Sbjct: 233775 ggcacacacagccacgctgg 233756
>gb|AC137938.12| Mus musculus chromosome 5, clone RP24-365C2, complete sequence Length = 151679 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 gagctattattagccattga 44 |||||||||||||||||||| Sbjct: 95960 gagctattattagccattga 95979
>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence Length = 244795 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 ggcacacacagccacgctgg 69 |||||||||||||||||||| Sbjct: 141466 ggcacacacagccacgctgg 141447
>emb|AL645645.14| Mouse DNA sequence from clone RP23-153G17 on chromosome 4, complete sequence Length = 70734 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 cacaggaaaggaagcagggc 275 |||||||||||||||||||| Sbjct: 50341 cacaggaaaggaagcagggc 50322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,410,568 Number of Sequences: 3902068 Number of extensions: 3410568 Number of successful extensions: 57640 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57587 Number of HSP's gapped (non-prelim): 53 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)