ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46c08 |
|---|---|
| Clone Library Name | barley_pub |
>Y1356_MYCBO (P64806) Hypothetical protein Mb1356| Length = 98 Score = 31.6 bits (70), Expect = 0.48 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 276 ETPPASVDERRQWHAQSWFRYESFGPRAK 190 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>Y1322_MYCTU (P64805) Hypothetical protein Rv1322/MT1363.1| Length = 98 Score = 31.6 bits (70), Expect = 0.48 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 276 ETPPASVDERRQWHAQSWFRYESFGPRAK 190 + P A VD+RR WH W + GP K Sbjct: 68 DLPQAGVDDRRHWHTPCWANRATRGPTRK 96
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 362 QEKAKKERLRLWQYGDVESD 303 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 362 QEKAKKERLRLWQYGDVESD 303 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 362 QEKAKKERLRLWQYGDVESD 303 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 30.8 bits (68), Expect = 0.82 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 362 QEKAKKERLRLWQYGDVESD 303 QE AK RL LW+YGD +D Sbjct: 881 QESAKSARLNLWRYGDFRAD 900
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 242 CLLSSTDAGGVSSRLELALPRRIQ 313 C S TD G +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>MUKB_MANSM (Q65TL9) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1499 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -1 Query: 236 MRSHGLDMKVLDPERNSVESLYENLVRKRDYIY 138 +R HG+ + L+P N+++S EN R +D +Y Sbjct: 942 IRQHGMTLSQLEPIANTLQSDPENYERLKDDLY 974
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 334 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 242 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>GHRL_ONCMY (Q76IQ4) Ghrelin precursor [Contains: Ghrelin-23; Ghrelin-24]| Length = 111 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -2 Query: 343 KGCACGSMETLNPTRKSKLQAG-GDPPRVGRRE 248 K + GS L+P++K +++ G G PPRVGRR+ Sbjct: 22 KSVSAGS-SFLSPSQKPQVRQGKGKPPRVGRRD 53
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 334 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 242 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 334 ACGSMETLNPTRKSKLQAGGDPPRVGRREKA 242 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 40 VLPLQRKNAVHKGHRP 87 VLP R+N VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 40 VLPLQRKNAVHKGHRP 87 VLP R+N VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,508,712 Number of Sequences: 219361 Number of extensions: 851337 Number of successful extensions: 2312 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2275 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2312 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
