>gb|AC123855.4| Mus musculus BAC clone RP23-328J17 from chromosome 12, complete sequence
          Length = 205684

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     caaagttttagcaaggttcat 117
              |||||||||||||||||||||
Sbjct: 189015 caaagttttagcaaggttcat 188995

>emb|AL591489.11| Human DNA sequence from clone RP11-814C6 on chromosome Xq22.2-23
             Contains the 5' end of the gene for a likely ortholog of
             mouse neuralin 1 (NRLN1) and a CpG island, complete
             sequence
          Length = 75140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 434   aatgagatgcaatttaagata 454
             |||||||||||||||||||||
Sbjct: 61391 aatgagatgcaatttaagata 61411

>gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, complete sequence
          Length = 148841

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 85    aaaagccttagacaaagttttagca 109
             |||||| ||||||||||||||||||
Sbjct: 68039 aaaagcattagacaaagttttagca 68015

>gb|AC008388.7| Homo sapiens chromosome 5 clone CTC-231O11, complete sequence
          Length = 122012

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   gaacaacaaaaggcataagaa 141
             |||||||||||||||||||||
Sbjct: 52695 gaacaacaaaaggcataagaa 52675

>gb|AC010250.7| Homo sapiens chromosome 5 clone CTC-425H14, complete sequence
          Length = 157061

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   aacaaaaggcataagaagtta 145
             |||||||||||||||||||||
Sbjct: 59186 aacaaaaggcataagaagtta 59166

>gb|AC008447.8| Homo sapiens chromosome 5 clone CTC-340K5, complete sequence
          Length = 159922

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    aacaaaaggcataagaagtta 145
              |||||||||||||||||||||
Sbjct: 155176 aacaaaaggcataagaagtta 155156

>gb|AC158517.1| Mus musculus BAC clone RP24-114B19 from chromosome 12, complete
             sequence
          Length = 168486

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    caaagttttagcaaggttcat 117
             |||||||||||||||||||||
Sbjct: 91689 caaagttttagcaaggttcat 91709

>gb|AC025463.5|AC025463 Homo sapiens chromosome 5 clone CTD-2252L7, complete sequence
          Length = 98070

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   aacaaaaggcataagaagtta 145
             |||||||||||||||||||||
Sbjct: 72446 aacaaaaggcataagaagtta 72426

>emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chromosome 7, complete
             sequence
          Length = 214393

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   aacaaaaggcataagaagtta 145
             |||||||||||||||||||||
Sbjct: 66649 aacaaaaggcataagaagtta 66629

>gb|AC113033.13| Mus musculus chromosome 7, clone RP23-220I5, complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    aacaaaaggcataagaagttagat 148
              |||||||||| |||||||||||||
Sbjct: 173752 aacaaaaggcctaagaagttagat 173775

>gb|AC163218.5| Mus musculus chromosome 7, clone RP24-102H24, complete sequence
          Length = 194207

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 125    aacaaaaggcataagaagttagat 148
              |||||||||| |||||||||||||
Sbjct: 139420 aacaaaaggcctaagaagttagat 139397

>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    tataagctccacattttaca 218
              ||||||||||||||||||||
Sbjct: 182831 tataagctccacattttaca 182850

>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence
          Length = 218870

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   acaaacatgagcaaacaaaa 277
             ||||||||||||||||||||
Sbjct: 86825 acaaacatgagcaaacaaaa 86844

>emb|AL157398.6| Human DNA sequence from clone RP11-56H7 on chromosome 10 Contains the
              NEBL gene for the nebulette protein (actin-binding Z-disc
              protein), a pseudogene similar to part of MTCO3
              (COIII)(cytochrome c oxidase III) and a pseudogene similar
              to part of MTND1 (NADH dehydrogenase 1), complete sequence
          Length = 172616

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     agctaaaagccttagacaaagttt 104
              ||||||||| ||||||||||||||
Sbjct: 117831 agctaaaagtcttagacaaagttt 117808

>emb|BX664015.1| Serratia marcescens plasmid R478
          Length = 274762

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    aacatggccaaaatctggtg 347
              ||||||||||||||||||||
Sbjct: 178440 aacatggccaaaatctggtg 178421

>emb|CR381625.6| Zebrafish DNA sequence from clone CH211-226F10, complete sequence
          Length = 193233

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    agtataagctccacattttacaca 220
              ||||||| ||||||||||||||||
Sbjct: 180412 agtataaactccacattttacaca 180435

>gb|AC012083.6| Homo sapiens 12 BAC RP11-864A19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166257

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   actttgcttcatggaaatga 438
             ||||||||||||||||||||
Sbjct: 64417 actttgcttcatggaaatga 64436

>dbj|AK056944.1| Homo sapiens cDNA FLJ32382 fis, clone SKMUS1000084
          Length = 1822

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  aaggcaagctaaaagcctta 94
           ||||||||||||||||||||
Sbjct: 968 aaggcaagctaaaagcctta 987

>gb|AC093637.5| Homo sapiens BAC clone RP11-239C17 from 4, complete sequence
          Length = 111211

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaggcaagctaaaagcctta 94
             ||||||||||||||||||||
Sbjct: 44218 aaggcaagctaaaagcctta 44237

>dbj|AK158921.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530008M24 product:unclassifiable, full insert
            sequence
          Length = 4044

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  acaaacatgagcaaacaaaa 277
            ||||||||||||||||||||
Sbjct: 2244 acaaacatgagcaaacaaaa 2263

>gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, complete sequence
          Length = 189471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tataagctccacattttaca 218
             ||||||||||||||||||||
Sbjct: 97090 tataagctccacattttaca 97071

>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence
          Length = 158203

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   aaggttcatctcgaacaacaaaag 132
             ||||||||||||||| ||||||||
Sbjct: 76056 aaggttcatctcgaaaaacaaaag 76033

>gb|AC153369.4| Mus musculus 10 BAC RP23-103E4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197003

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 131   aggcataagaagttagatacatct 154
             ||||||||||||| ||||||||||
Sbjct: 36127 aggcataagaagtcagatacatct 36104

>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     attgctggatgacagctagc 320
               ||||||||||||||||||||
Sbjct: 1492743 attgctggatgacagctagc 1492762

>gb|L08904.1|HUMKBF2 Homo sapiens H2K binding factor 2 (KBF2) mRNA, complete cds
          Length = 5360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   aaggcaagctaaaagcctta 94
            ||||||||||||||||||||
Sbjct: 4522 aaggcaagctaaaagcctta 4541

>emb|AL157756.3|CNS01RG4 Human chromosome 14 DNA sequence BAC C-2184C24 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 127544

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 426   ttcatggaaatgagatgcaattta 449
             ||||||||||||||| ||||||||
Sbjct: 18564 ttcatggaaatgagaagcaattta 18587

>dbj|D14041.1| Homo sapiens mRNA for H-2K binding factor-2, complete cds
          Length = 5360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   aaggcaagctaaaagcctta 94
            ||||||||||||||||||||
Sbjct: 4522 aaggcaagctaaaagcctta 4541


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,345,799
Number of Sequences: 3902068
Number of extensions: 4345799
Number of successful extensions: 73833
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73767
Number of HSP's gapped (non-prelim): 66
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)