ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl46b10 |
|---|---|
| Clone Library Name | barley_pub |
>ECM29_PONPY (Q5R6J0) Proteasome-associated protein ECM29 homolog (Ecm29)| (Fragment) Length = 1810 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/91 (34%), Positives = 54/91 (59%) Frame = -2 Query: 284 IINKLFDTLIYSSRKEERCAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNELT 105 +++ + + I S R A + L+SL H ++ L +IQ AF ++ +++EL+ Sbjct: 907 VLDVILNKHIISPNPHVRQAACIWLLSLVRKLSTHKEVKSHLKEIQSAFVSVLSENDELS 966 Query: 104 QDLASQGMSIVYELGDASMKGQLVHALVNTL 12 QD+AS+G+ +VYELG+ + +LV LV TL Sbjct: 967 QDVASKGLGLVYELGNEQDQQELVSTLVETL 997
>ECM29_HUMAN (Q5VYK3) Proteasome-associated protein ECM29 homolog (Ecm29)| Length = 1845 Score = 59.7 bits (143), Expect = 3e-09 Identities = 31/91 (34%), Positives = 54/91 (59%) Frame = -2 Query: 284 IINKLFDTLIYSSRKEERCAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNELT 105 +++ + + I S R A + L+SL H ++ L +IQ AF ++ +++EL+ Sbjct: 942 VLDVILNKHIISPNPHVRQAACIWLLSLVRKLSTHKEVKSHLKEIQSAFVSVLSENDELS 1001 Query: 104 QDLASQGMSIVYELGDASMKGQLVHALVNTL 12 QD+AS+G+ +VYELG+ + +LV LV TL Sbjct: 1002 QDVASKGLGLVYELGNEQDQQELVSTLVETL 1032
>ECM29_MOUSE (Q6PDI5) Proteasome-associated protein ECM29 homolog (Ecm29)| Length = 1840 Score = 59.3 bits (142), Expect = 3e-09 Identities = 31/91 (34%), Positives = 54/91 (59%) Frame = -2 Query: 284 IINKLFDTLIYSSRKEERCAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNELT 105 +++ + + I S R A + L+SL H ++ L +IQ AF ++ +++EL+ Sbjct: 937 VLDVILNKHIISPNPHVRQAACIWLLSLVRKLSTHREVKSHLKEIQSAFVSVLSENDELS 996 Query: 104 QDLASQGMSIVYELGDASMKGQLVHALVNTL 12 QD+AS+G+ +VYELG+ + +LV LV TL Sbjct: 997 QDVASKGLGLVYELGNEQDQQELVSTLVETL 1027
>ECM29_DROME (Q9V677) Proteasome-associated protein ECM29 homolog| Length = 1890 Score = 57.8 bits (138), Expect = 1e-08 Identities = 28/95 (29%), Positives = 54/95 (56%) Frame = -2 Query: 290 EEIINKLFDTLIYSSRKEERCAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNE 111 ++ +N L L+ R A +V L+++ +C + P +L +Q AF+ L+ D +E Sbjct: 941 DQFLNSLI-RLVTDPNPHSRQAISVWLLAVVKHCSQRPAVLAKKELLQFAFTELLSDDSE 999 Query: 110 LTQDLASQGMSIVYELGDASMKGQLVHALVNTLTG 6 QD+AS+G+ +VY + D+ + L ++L++ L G Sbjct: 1000 FVQDVASRGLGLVYSISDSGSQSDLANSLLDQLIG 1034
>ECM29_YEAST (P38737) Proteasome component ECM29 (Extracellular matrix protein 29)| Length = 1868 Score = 50.8 bits (120), Expect = 1e-06 Identities = 25/81 (30%), Positives = 43/81 (53%) Frame = -2 Query: 251 SSRKEERCAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNELTQDLASQGMSIV 72 S++ R A + L+S Y G P++ I F + D +E QD A++G+S+V Sbjct: 960 STKPSLRKASCIWLLSYIQYLGHLPEVSSKCNDIHLRFMRFLADRDEFIQDSAARGLSLV 1019 Query: 71 YELGDASMKGQLVHALVNTLT 9 YE+G + +K +V L+ + T Sbjct: 1020 YEIGGSDLKESMVKGLLKSFT 1040
>SYY_HAEIN (P43836) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 401 Score = 35.8 bits (81), Expect = 0.040 Identities = 27/101 (26%), Positives = 47/101 (46%) Frame = -2 Query: 362 DAPLLDSRNLGKRSSCEEARTAAQEEIINKLFDTLIYSSRKEERCAGTVCLVSLTMYCGR 183 D +L ++ L R EEA AA++E IN+ + E +G + L +L G Sbjct: 286 DVKILLAKELIARFHNEEAANAAEQEFINRFQKGAMPDEMPEFTFSGEMGLATLLKEAGL 345 Query: 182 HPKILELLPQIQEAFSHLIGDSNELTQDLASQGMSIVYELG 60 P E + Q+ + G+ + +D A +G + VY++G Sbjct: 346 VPSTSEAIRSAQQGGVKINGEKVDNVKDNAPKGTN-VYQVG 385
>SY112_ARATH (Q9ZPV9) Putative syntaxin-112 (AtSYP112)| Length = 285 Score = 30.4 bits (67), Expect = 1.7 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Frame = -2 Query: 413 LETNFVSLSQATNFLTGDAPLLDSRNLGKRSSCEE------ARTAAQEEIINKLFDTLIY 252 +E+N V++S+ N + L+ RN+ R+S +E RT+ + KL DT+ Sbjct: 94 MESNIVTISRKANTVKTLIETLEKRNVANRTSFKEGSCVDRTRTSITNGVRKKLRDTMSE 153 Query: 251 SSRKEER 231 R ER Sbjct: 154 FHRLRER 160
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 30.4 bits (67), Expect = 1.7 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = -2 Query: 365 GDAPLLDSRNLGKRSSCEEARTAAQEEIINKLFDTLI--------YSSRKEERCAGTVCL 210 GDAPLL + L KR ++ ++ + KL T + + S+++E L Sbjct: 78 GDAPLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIKTAFRSKRDE------AL 131 Query: 209 VSLTMYCGRHPKILELLPQIQEAFSHLIGDSNE 111 SLT R L +LP +QE H + +E Sbjct: 132 PSLTQV--RRENDLYVLPPLQEEEKHSSEEEDE 162
>BC11A_HUMAN (Q9H165) B-cell lymphoma/leukemia 11A (B-cell CLL/lymphoma 11A)| (COUP-TF-interacting protein 1) (Ecotropic viral integration site 9 protein) (EVI-9) Length = 835 Score = 28.9 bits (63), Expect = 4.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -2 Query: 371 LTGDAPLLDSRNLGKRSSCEEARTAAQEEIINKLFDTLIYSSRKEERCAGTVCL 210 LT D P D LG + T Q ++ L D LI+ K ++C G++CL Sbjct: 26 LTDDEP--DHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCL 77
>BC11A_MOUSE (Q9QYE3) B-cell lymphoma/leukemia 11A (B-cell CLL/lymphoma 11A)| (COUP-TF-interacting protein 1) (Ecotropic viral integration site 9 protein) (EVI-9) Length = 773 Score = 28.9 bits (63), Expect = 4.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -2 Query: 371 LTGDAPLLDSRNLGKRSSCEEARTAAQEEIINKLFDTLIYSSRKEERCAGTVCL 210 LT D P D LG + T Q ++ L D LI+ K ++C G++CL Sbjct: 26 LTDDEP--DHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCL 77
>NEURL_MOUSE (Q923S6) Neuralized-like protein 1 (m-neuralized 1) (m-neu1)| Length = 574 Score = 25.0 bits (53), Expect(2) = 6.3 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 209 PNRLYPHSVPLFCCYKLVYQT 271 P+R++P S+P + C LV Q+ Sbjct: 130 PSRIHPDSLPKYACPDLVSQS 150 Score = 21.9 bits (45), Expect(2) = 6.3 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 60 TKFIHNTHTLGCQILCKLIRIANKVRKGFLN 152 T + + HT G QIL L A K + F N Sbjct: 61 TPLLFHPHTKGSQILMDLSHKAVKRQASFCN 91
>NEUL1_HUMAN (O76050) Neuralized-like protein 1 (h-neuralized 1) (h-neu) (RING| finger protein 67) Length = 574 Score = 25.0 bits (53), Expect(2) = 6.3 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +2 Query: 209 PNRLYPHSVPLFCCYKLVYQT 271 P+R++P S+P + C LV Q+ Sbjct: 130 PSRIHPDSLPKYACPDLVSQS 150 Score = 21.9 bits (45), Expect(2) = 6.3 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 60 TKFIHNTHTLGCQILCKLIRIANKVRKGFLN 152 T + + HT G QIL L A K + F N Sbjct: 61 TPLLFHPHTKGSQILMDLSHKAVKRQASFCN 91
>FBPC_NEIGO (Q50966) Ferric cations import ATP-binding protein fbpC (EC| 3.6.3.30) Length = 352 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +2 Query: 170 GSSDADRSTL*VRPNR--LYPHSVPLFCCYKLVYQTT 274 G+ R TL +RP + L+PHS P+ + +V +TT Sbjct: 267 GAPAGTRGTLLIRPEQFSLHPHSAPVVSIHAVVLKTT 303
>KPYK_SPICI (P19680) Pyruvate kinase (EC 2.7.1.40) (PK) (Fragment)| Length = 192 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +3 Query: 21 HQCMNQLPFHRSITKFIHNTHTLGCQILCKLIRIANKVRKGFLNLWKEFKDLR 179 HQ N L F S KF+H +TL ++ K +K L + K+ K L+ Sbjct: 97 HQMNNSLMFSPSFCKFLHYHYTL---------LLSKKTKKQLLKIVKKLKKLQ 140
>VHUG_METJA (Q58591) F420-non-reducing hydrogenase vhu subunit G (EC 1.12.99.-)| Length = 288 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -2 Query: 230 CAGTVCLVSLTMYCGRHPKILELLPQIQEAFSHLIGDSNELTQDL 96 C + C +SL H K+LE+LP ++ ++ +I D E+ + + Sbjct: 14 CGCSGCHISLL---DLHDKLLEVLPNLEIVYAPIIADPKEIPEGI 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,966,024 Number of Sequences: 219361 Number of extensions: 1029084 Number of successful extensions: 2568 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2533 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2568 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
