Clone Name | rbastl46b10 |
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Clone Library Name | barley_pub |
>dbj|AK121066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060D18, full insert sequence Length = 3413 Score = 321 bits (162), Expect = 1e-84 Identities = 351/414 (84%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 3056 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2997 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcattagaa 120 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| | Sbjct: 2996 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2937 Query: 121 tcgccaataaggtgagaaaaggcttcctgaatctgtggaaggagttcaaggatcttcgga 180 || |||| |||||| | || |||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 2936 tcaccaagaaggtgggtaagggcttcctgaatttgtggaagtagttccaggatctttgga 2877 Query: 181 tgccgaccgcagtacattgtgagtgagaccaaacagactgtacccgcacagcgttcctct 240 ||| |||| ||||||||||| ||||||||||| ||||| ||||| || || | ||||||| Sbjct: 2876 tgctgaccacagtacattgtaagtgagaccaaccagacagtacctgcgcacctttcctct 2817 Query: 241 tttctgctgctataaattagtgtatcaaacaacttgtttataatttcttcttgagccgct 300 ||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||||| | Sbjct: 2816 tttctactgctataaattaatgtatcaaataaccgttttataatttcttctcgagccatt 2757 Query: 301 gtacgtgcttcttcacagctgcttcttttacctaagtttcttgagtcaagcaggggtgca 360 | ||||||||||||| |||| |||| |||| || ||| |||| | ||||||| Sbjct: 2756 gcgtgtgcttcttcacaatcacttcctttattagagttactcgagacaagtacgggtgca 2697 Query: 361 tcaccagtaagaaagtttgtggcttgggaaagggaaacaaagtttgtttctagt 414 |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 2696 tcaccagtaagatagtttgtggcctgggaaagggagacaaagttcgtttctagt 2643
>dbj|AK065453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D11, full insert sequence Length = 3286 Score = 321 bits (162), Expect = 1e-84 Identities = 351/414 (84%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 2929 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 2870 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcattagaa 120 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| | Sbjct: 2869 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 2810 Query: 121 tcgccaataaggtgagaaaaggcttcctgaatctgtggaaggagttcaaggatcttcgga 180 || |||| |||||| | || |||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 2809 tcaccaagaaggtgggtaagggcttcctgaatttgtggaagtagttccaggatctttgga 2750 Query: 181 tgccgaccgcagtacattgtgagtgagaccaaacagactgtacccgcacagcgttcctct 240 ||| |||| ||||||||||| ||||||||||| ||||| ||||| || || | ||||||| Sbjct: 2749 tgctgaccacagtacattgtaagtgagaccaaccagacagtacctgcgcacctttcctct 2690 Query: 241 tttctgctgctataaattagtgtatcaaacaacttgtttataatttcttcttgagccgct 300 ||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||||| | Sbjct: 2689 tttctactgctataaattaatgtatcaaataaccgttttataatttcttctcgagccatt 2630 Query: 301 gtacgtgcttcttcacagctgcttcttttacctaagtttcttgagtcaagcaggggtgca 360 | ||||||||||||| |||| |||| |||| || ||| |||| | ||||||| Sbjct: 2629 gcgtgtgcttcttcacaatcacttcctttattagagttactcgagacaagtacgggtgca 2570 Query: 361 tcaccagtaagaaagtttgtggcttgggaaagggaaacaaagtttgtttctagt 414 |||||||||||| |||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 2569 tcaccagtaagatagtttgtggcctgggaaagggagacaaagttcgtttctagt 2516
>dbj|AK105296.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G12, full insert sequence Length = 2916 Score = 268 bits (135), Expect = 1e-68 Identities = 234/267 (87%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 267 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 208 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcattagaa 120 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| | Sbjct: 207 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcattctga 148 Query: 121 tcgccaataaggtgagaaaaggcttcctgaatctgtggaaggagttcaaggatcttcgga 180 || |||| |||||| | || |||||||||||| |||||||| |||||||||||||| ||| Sbjct: 147 tcaccaagaaggtgggtaagggcttcctgaatttgtggaagtagttcaaggatctttgga 88 Query: 181 tgccgaccgcagtacattgtgagtgagaccaaacagactgtacccgcacagcgttcctct 240 ||| |||| ||||||||||| ||||||||||| ||||| ||||| || || | ||||||| Sbjct: 87 tgctgaccacagtacattgtaagtgagaccaaccagacagtacctgcgcacctttcctct 28 Query: 241 tttctgctgctataaattagtgtatca 267 ||||| ||||||||||||||||||||| Sbjct: 27 tttctactgctataaattagtgtatca 1
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 216 bits (109), Expect = 4e-53 Identities = 229/269 (85%) Strand = Plus / Plus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||| |||| Sbjct: 1681573 cctgaatttgtggaagtagttcaaggatctttggatgctgaccacagtacattgtaagtg 1681632 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||||||||| Sbjct: 1681633 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattagtgtat 1681692 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 1681693 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 1681752 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| ||||||||||||||||||||| |||||||||| | Sbjct: 1681753 ctttattagagttactcgagacaagtaggggtgcatcaccagtaagatagtttgtggcct 1681812 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 1681813 gggaaagggagacaaagttcgtttctagt 1681841 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1680775 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680834 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 1680835 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 1680890
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 216 bits (109), Expect = 4e-53 Identities = 229/269 (85%) Strand = Plus / Plus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||| |||| Sbjct: 1681551 cctgaatttgtggaagtagttcaaggatctttggatgctgaccacagtacattgtaagtg 1681610 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||||||||| Sbjct: 1681611 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattagtgtat 1681670 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 1681671 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 1681730 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| ||||||||||||||||||||| |||||||||| | Sbjct: 1681731 ctttattagagttactcgagacaagtaggggtgcatcaccagtaagatagtttgtggcct 1681790 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 1681791 gggaaagggagacaaagttcgtttctagt 1681819 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1680753 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 1680812 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 1680813 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 1680868
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 216 bits (109), Expect = 4e-53 Identities = 229/269 (85%) Strand = Plus / Minus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||| |||| Sbjct: 85348 cctgaatttgtggaagtagttcaaggatctttggatgctgaccacagtacattgtaagtg 85289 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||||||||| Sbjct: 85288 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattagtgtat 85229 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 85228 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 85169 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| ||||||||||||||||||||| |||||||||| | Sbjct: 85168 ctttattagagttactcgagacaagtaggggtgcatcaccagtaagatagtttgtggcct 85109 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 85108 gggaaagggagacaaagttcgtttctagt 85080 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 86146 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 86087 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 86086 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 86031
>emb|BX000508.1|CNS08CDY Oryza sativa chromosome 12, . BAC OJ1575_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 91883 Score = 216 bits (109), Expect = 4e-53 Identities = 229/269 (85%) Strand = Plus / Minus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| |||||||||||||| |||||| |||| ||||||||||| |||| Sbjct: 11351 cctgaatttgtggaagtagttcaaggatctttggatgctgaccacagtacattgtaagtg 11292 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||||||||| Sbjct: 11291 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattagtgtat 11232 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 11231 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 11172 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| ||||||||||||||||||||| |||||||||| | Sbjct: 11171 ctttattagagttactcgagacaagtaggggtgcatcaccagtaagatagtttgtggcct 11112 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 11111 gggaaagggagacaaagttcgtttctagt 11083 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 12149 gctgcgccagacagtgtattcacgagagcatgaaccagctgctccttcatagatgcatca 12090 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 12089 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 12034
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 192 bits (97), Expect = 6e-46 Identities = 226/269 (84%) Strand = Plus / Plus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||| |||| Sbjct: 82479 cctgaatttgtggaagtagttccaggatctttggatgctgaccacagtacattgtaagtg 82538 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||| ||||| Sbjct: 82539 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattaatgtat 82598 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 82599 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 82658 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| | ||||||||||||||||||| |||||||||| | Sbjct: 82659 ctttattagagttactcgagacaagtacgggtgcatcaccagtaagatagtttgtggcct 82718 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 82719 gggaaagggagacaaagttcgtttctagt 82747 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 81678 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 81737 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 81738 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 81793
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 192 bits (97), Expect = 6e-46 Identities = 226/269 (84%) Strand = Plus / Plus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||| |||| Sbjct: 1727472 cctgaatttgtggaagtagttccaggatctttggatgctgaccacagtacattgtaagtg 1727531 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||| ||||| Sbjct: 1727532 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattaatgtat 1727591 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 1727592 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 1727651 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| | ||||||||||||||||||| |||||||||| | Sbjct: 1727652 ctttattagagttactcgagacaagtacgggtgcatcaccagtaagatagtttgtggcct 1727711 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 1727712 gggaaagggagacaaagttcgtttctagt 1727740 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1726671 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1726730 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 1726731 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 1726786
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 192 bits (97), Expect = 6e-46 Identities = 226/269 (84%) Strand = Plus / Plus Query: 146 cctgaatctgtggaaggagttcaaggatcttcggatgccgaccgcagtacattgtgagtg 205 ||||||| |||||||| ||||| |||||||| |||||| |||| ||||||||||| |||| Sbjct: 1725193 cctgaatttgtggaagtagttccaggatctttggatgctgaccacagtacattgtaagtg 1725252 Query: 206 agaccaaacagactgtacccgcacagcgttcctcttttctgctgctataaattagtgtat 265 ||||||| ||||| ||||| || || | |||||||||||| ||||||||||||| ||||| Sbjct: 1725253 agaccaaccagacagtacctgcgcacctttcctcttttctactgctataaattaatgtat 1725312 Query: 266 caaacaacttgtttataatttcttcttgagccgctgtacgtgcttcttcacagctgcttc 325 |||| ||| ||||||||||||||| ||||| || ||||||||||||| |||| Sbjct: 1725313 caaataaccgttttataatttcttctcgagccattgcgtgtgcttcttcacaatcacttc 1725372 Query: 326 ttttacctaagtttcttgagtcaagcaggggtgcatcaccagtaagaaagtttgtggctt 385 |||| |||| || ||| |||| | ||||||||||||||||||| |||||||||| | Sbjct: 1725373 ctttattagagttactcgagacaagtacgggtgcatcaccagtaagatagtttgtggcct 1725432 Query: 386 gggaaagggaaacaaagtttgtttctagt 414 |||||||||| |||||||| ||||||||| Sbjct: 1725433 gggaaagggagacaaagttcgtttctagt 1725461 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 1 gctgcgccagtcagtgtattcaccagtgcatgaaccaactgccctttcatagaagcatca 60 |||||||||| |||||||||||| || |||||||||| |||| | |||||||| |||||| Sbjct: 1724392 gctgcgccagacagtgtattcacaagagcatgaaccagctgctccttcatagatgcatca 1724451 Query: 61 ccaagttcatacacaatactcataccttgggatgccaaatcttgtgtaagctcatt 116 ||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| Sbjct: 1724452 ccaagctcatatacaatactcatgccttgggatgccagatcttgtgtaagatcatt 1724507
>emb|CT009655.2| Medicago truncatula chromosome 5 clone mth2-121g11, COMPLETE SEQUENCE Length = 126690 Score = 63.9 bits (32), Expect = 4e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 45 tttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttg 104 ||||||||| ||||||| || ||||||||||||||||| ||||| || ||||| ||||| Sbjct: 44254 tttcatagattcatcacctaggtcatacacaatactcatgccttgagaagccaactcttg 44195 Query: 105 tgtaagctcatt 116 ||| || ||||| Sbjct: 44194 tgtgagttcatt 44183
>ref|NM_179755.1| Arabidopsis thaliana unknown protein AT2G26780 mRNA, complete cds Length = 5824 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 46 ttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttgt 105 ||||| || ||||||||||||||||| | || ||||| || |||||||||| || ||| Sbjct: 3144 ttcattgatgcatcaccaagttcatagatgatgctcatgccctgggatgccagctcctgt 3085 Query: 106 gtaagctcatt 116 ||||| ||||| Sbjct: 3084 gtaagttcatt 3074
>gb|BT008433.1| Arabidopsis thaliana At2g26780 gene, complete cds Length = 3627 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 46 ttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttgt 105 ||||| || ||||||||||||||||| | || ||||| || |||||||||| || ||| Sbjct: 1121 ttcattgatgcatcaccaagttcatagatgatgctcatgccctgggatgccagctcctgt 1062 Query: 106 gtaagctcatt 116 ||||| ||||| Sbjct: 1061 gtaagttcatt 1051
>gb|AY099719.1| Arabidopsis thaliana unknown protein (At2g26780) mRNA, complete cds Length = 3854 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 46 ttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttgt 105 ||||| || ||||||||||||||||| | || ||||| || |||||||||| || ||| Sbjct: 1174 ttcattgatgcatcaccaagttcatagatgatgctcatgccctgggatgccagctcctgt 1115 Query: 106 gtaagctcatt 116 ||||| ||||| Sbjct: 1114 gtaagttcatt 1104
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence Length = 87978 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Plus Query: 46 ttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttgt 105 ||||| || ||||||||||||||||| | || ||||| || |||||||||| || ||| Sbjct: 87243 ttcattgatgcatcaccaagttcatagatgatgctcatgccctgggatgccagctcctgt 87302 Query: 106 gtaagctcatt 116 ||||| ||||| Sbjct: 87303 gtaagttcatt 87313
>gb|AC003105.3| Arabidopsis thaliana chromosome 2 clone F18A8 map B68, complete sequence Length = 95167 Score = 46.1 bits (23), Expect = 0.090 Identities = 59/71 (83%) Strand = Plus / Minus Query: 46 ttcatagaagcatcaccaagttcatacacaatactcataccttgggatgccaaatcttgt 105 ||||| || ||||||||||||||||| | || ||||| || |||||||||| || ||| Sbjct: 87275 ttcattgatgcatcaccaagttcatagatgatgctcatgccctgggatgccagctcctgt 87216 Query: 106 gtaagctcatt 116 ||||| ||||| Sbjct: 87215 gtaagttcatt 87205
>gb|AY711067.1| Uncultured bacterium clone SIMO-1701 16S ribosomal RNA gene, partial sequence Length = 748 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 tttcttgagtcaagcaggggtgcat 361 ||||||||| ||||||||||||||| Sbjct: 600 tttcttgaggcaagcaggggtgcat 624
>emb|AL138810.10| Human DNA sequence from clone RP1-179L10 on chromosome 11p12-14.1 Contains a gene encoding the dihydroxylipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex (E3-binding protein), a gene similar to the CGI-29 protein, a CpG island, ESTs, STSs and GSSs, complete sequence Length = 128228 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 taaggtgagaaaaggcttcct 148 ||||||||||||||||||||| Sbjct: 68148 taaggtgagaaaaggcttcct 68168
>emb|AJ298105.1|HSA298105 Homo sapiens PDX1 gene for lipoyl-containing component X, exons 1-11 Length = 128228 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 taaggtgagaaaaggcttcct 148 ||||||||||||||||||||| Sbjct: 60081 taaggtgagaaaaggcttcct 60061
>dbj|AB177234.1| Uncultured bacterium gene for 16S rRNA, clone: ODP1244B1.13 Length = 1103 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 tttcttgagtcaagcaggggtgcat 361 ||||||||| ||||||||||||||| Sbjct: 639 tttcttgaggcaagcaggggtgcat 663
>dbj|AB177216.1| Uncultured bacterium gene for 16S rRNA, clone: ODP1230B4.12 Length = 1440 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 tttcttgagtcaagcaggggtgcat 361 ||||||||| ||||||||||||||| Sbjct: 627 tttcttgaggcaagcaggggtgcat 651
>gb|AC010148.13| Homo sapiens BAC clone RP11-367B19 from 2, complete sequence Length = 231562 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 gaaagggaaacaaagtttgtttcta 412 ||||||||||||||| ||||||||| Sbjct: 213864 gaaagggaaacaaagcttgtttcta 213840
>gb|AY510318.1| Rattus norvegicus vomeronasal V1r-type receptor V1rc6 mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence Length = 227044 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 aggtgagaaaaggcttcctgaatctgtg 157 |||||||||| |||||||||||| |||| Sbjct: 121825 aggtgagaaagggcttcctgaatgtgtg 121798
>gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, complete sequence Length = 195579 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 130 aggtgagaaaaggcttcctgaatctgtg 157 |||||||||| |||||||||||| |||| Sbjct: 11386 aggtgagaaagggcttcctgaatgtgtg 11359
>gb|AC129288.3| Mus musculus BAC clone RP24-481M4 from chromosome 1, complete sequence Length = 179082 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agtgtatcaaacaacttgtt 278 |||||||||||||||||||| Sbjct: 53213 agtgtatcaaacaacttgtt 53232
>emb|AJ841916.1| Brassica juncea partial rt gene for reverse transciptase, clone Bjco3 Length = 257 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 aagggaaacaaagtttgttt 409 |||||||||||||||||||| Sbjct: 64 aagggaaacaaagtttgttt 83
>gb|AC110682.6| Rattus norvegicus 18 BAC CH230-197I20 (Children's Hospital Oakland Research Institute) complete sequence Length = 166696 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 cttcttttacctaagtttcttgag 345 ||||||||||||||||| |||||| Sbjct: 111391 cttcttttacctaagttgcttgag 111368
>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence Length = 140345 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttgggaaagggaaacaaagt 403 |||||||||||||||||||| Sbjct: 93629 ttgggaaagggaaacaaagt 93610
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttctgctgctataaatta 259 |||||||||||||||||||| Sbjct: 47570 ttttctgctgctataaatta 47589
>emb|Z86113.1|SLAMLC S.lividans amlC gene Length = 3480 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ttgagccgctgtacgtgctt 310 |||||||||||||||||||| Sbjct: 3081 ttgagccgctgtacgtgctt 3062
>gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, complete sequence Length = 171158 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttctgctgctataaatta 259 |||||||||||||||||||| Sbjct: 8133 ttttctgctgctataaatta 8152
>dbj|AB177307.1| Uncultured bacterium gene for 16S rRNA, clone: ODP1251B11.11 Length = 1095 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 tttcttgagtcaagcaggggtgca 360 ||||||||| |||||||||||||| Sbjct: 646 tttcttgaggcaagcaggggtgca 669
>gb|AC139314.4| Medicago truncatula clone mth2-24j7, complete sequence Length = 32785 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 aaacaaagtttgtttctagt 414 |||||||||||||||||||| Sbjct: 31179 aaacaaagtttgtttctagt 31198
>gb|AC110747.3| Homo sapiens, clone RP11-103L16, complete sequence Length = 140919 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 atcaaacaacttgtttataa 283 |||||||||||||||||||| Sbjct: 80539 atcaaacaacttgtttataa 80558
>gb|DQ394931.1| Uncultured bacterium clone VHS-B3-14 16S ribosomal RNA gene, partial sequence Length = 1527 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 ttcttgagtcaagcaggggtgcat 361 |||||||| ||||||||||||||| Sbjct: 660 ttcttgagacaagcaggggtgcat 683
>gb|AY065476.1| Mus musculus vomeronasal receptor V1RC20 (V1rc20) gene, complete cds Length = 912 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>gb|AY065475.1| Mus musculus vomeronasal receptor V1RC19 (V1rc19) gene, complete cds Length = 912 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>gb|AC156287.12| Mus musculus 6 BAC RP24-243F8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159846 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 73239 tgtgagtgagaccaaacaga 73258 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 56226 tgtgagtgagaccaaacaga 56245
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 caccagtgcatgaaccaactgccc 44 |||||||||| ||||||||||||| Sbjct: 18367888 caccagtgcaagaaccaactgccc 18367865
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttctgctgctataaatta 259 |||||||||||||||||||| Sbjct: 421747 ttttctgctgctataaatta 421766
>gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195332 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 10252 tgtgagtgagaccaaacaga 10233
>ref|NM_134175.1| Mus musculus vomeronasal 1 receptor, C20 (V1rc20), mRNA Length = 912 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>ref|NM_134174.1| Mus musculus vomeronasal 1 receptor, C19 (V1rc19), mRNA Length = 912 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>gb|AC055712.13| Homo sapiens 3 BAC RP11-63K8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155056 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ttttctgctgctataaatta 259 |||||||||||||||||||| Sbjct: 93809 ttttctgctgctataaatta 93790
>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F10 Length = 153929 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 caccagtgcatgaaccaactgccc 44 |||||||||| ||||||||||||| Sbjct: 97383 caccagtgcaagaaccaactgccc 97360
>emb|Z99281.1|CEY57G11C Caenorhabditis elegans YAC Y57G11C, complete sequence Length = 313573 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 tgtttataatttcttcttga 294 |||||||||||||||||||| Sbjct: 46877 tgtttataatttcttcttga 46896
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome Length = 1860725 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gtggaaggagttcaaggatc 174 |||||||||||||||||||| Sbjct: 776201 gtggaaggagttcaaggatc 776220
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ttgagccgctgtacgtgctt 310 |||||||||||||||||||| Sbjct: 43463 ttgagccgctgtacgtgctt 43482
>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence Length = 197108 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ggcttgggaaagggaaacaa 400 |||||||||||||||||||| Sbjct: 99086 ggcttgggaaagggaaacaa 99105
>ref|NM_001009519.1| Rattus norvegicus vomeronasal V1r-type receptor V1rc6 (V1rc6), mRNA Length = 900 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgtgagtgagaccaaacaga 217 |||||||||||||||||||| Sbjct: 450 tgtgagtgagaccaaacaga 469
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 aatttcttcttgagccgctg 301 |||||||||||||||||||| Sbjct: 1414528 aatttcttcttgagccgctg 1414509 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,522,094 Number of Sequences: 3902068 Number of extensions: 4522094 Number of successful extensions: 76648 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 76409 Number of HSP's gapped (non-prelim): 240 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)