Clone Name | rbastl46b08 |
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Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 4e-40 Identities = 239/288 (82%), Gaps = 5/288 (1%) Strand = Plus / Minus Query: 37 gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96 |||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331 Query: 97 ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154 | |||||| |||||||| || | ||||||||| |||| | ||| |||| | | |||| Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271 Query: 155 tacagactgaaaaatagactctggagtctacctattaatagtctgaagaaactaagagct 214 ||||||| |||||||||||| |||||||||| |||| || ||||||| |||||||| | Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211 Query: 215 gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274 | | | |||||||||||||||||||||||||||||| | || ||| |||| || || Sbjct: 10412210 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10412154 Query: 275 ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaa 322 |||||| || || || ||||| || || |||||||||||||||||||| Sbjct: 10412153 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaa 10412106
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 172 bits (87), Expect = 4e-40 Identities = 239/288 (82%), Gaps = 5/288 (1%) Strand = Plus / Minus Query: 37 gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96 |||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884 Query: 97 ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154 | |||||| |||||||| || | ||||||||| |||| | ||| |||| | | |||| Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824 Query: 155 tacagactgaaaaatagactctggagtctacctattaatagtctgaagaaactaagagct 214 ||||||| |||||||||||| |||||||||| |||| || ||||||| |||||||| | Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764 Query: 215 gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274 | | | |||||||||||||||||||||||||||||| | || ||| |||| || || Sbjct: 68763 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 68707 Query: 275 ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaa 322 |||||| || || || ||||| || || |||||||||||||||||||| Sbjct: 68706 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaa 68659
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 4e-40 Identities = 239/288 (82%), Gaps = 5/288 (1%) Strand = Plus / Minus Query: 37 gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96 |||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432 Query: 97 ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154 | |||||| |||||||| || | ||||||||| |||| | ||| |||| | | |||| Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372 Query: 155 tacagactgaaaaatagactctggagtctacctattaatagtctgaagaaactaagagct 214 ||||||| |||||||||||| |||||||||| |||| || ||||||| |||||||| | Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312 Query: 215 gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274 | | | |||||||||||||||||||||||||||||| | || ||| |||| || || Sbjct: 10410311 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10410255 Query: 275 ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaa 322 |||||| || || || ||||| || || |||||||||||||||||||| Sbjct: 10410254 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaa 10410207
>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full insert sequence Length = 1650 Score = 172 bits (87), Expect = 4e-40 Identities = 239/288 (82%), Gaps = 5/288 (1%) Strand = Plus / Minus Query: 37 gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96 |||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544 Query: 97 ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154 | |||||| |||||||| || | ||||||||| |||| | ||| |||| | | |||| Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484 Query: 155 tacagactgaaaaatagactctggagtctacctattaatagtctgaagaaactaagagct 214 ||||||| |||||||||||| |||||||||| |||| || ||||||| |||||||| | Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424 Query: 215 gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274 | | | |||||||||||||||||||||||||||||| | || ||| |||| || || Sbjct: 1423 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 1367 Query: 275 ggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaa 322 |||||| || || || ||||| || || |||||||||||||||||||| Sbjct: 1366 ggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaa 1319
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 107 bits (54), Expect = 2e-20 Identities = 143/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 151 tatatacagactgaaaaatagactctggagtctacctattaatagtctgaagaaactaag 210 ||||||||||| |||||||||||| |||||||||| |||| || ||||||| ||||||| Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681 Query: 211 agctgggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtat 270 | | | | ||| |||||||||||||||||||||||||||| | || ||| |||| | Sbjct: 125680 aaccgaaacttt---tcagtctgcaagaggctgactactctgtaatagtcgattttgtgt 125624 Query: 271 catcggtgatggtagtggcggtcgcagtagtatggctcggctcgccggtgaa 322 | |||||||| || || || ||||| || || |||||||||||||||||||| Sbjct: 125623 cgtcggtgatcgtcgtcgccgtcgcggtggtttggctcggctcgccggtgaa 125572
>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence Length = 161160 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 146 aactctatatacagactgaaaaa 168 ||||||||||||||||||||||| Sbjct: 155387 aactctatatacagactgaaaaa 155409
>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete sequence Length = 22695 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Plus Query: 199 gaagaaactaagagctgggattt 221 ||||||||||||||||||||||| Sbjct: 20220 gaagaaactaagagctgggattt 20242
>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence Length = 103709 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 146 aactctatatacagactgaaaaa 168 ||||||||||||||||||||||| Sbjct: 25345 aactctatatacagactgaaaaa 25323
>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155898 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 81 ccagatacaaatgaatttagg 101 ||||||||||||||||||||| Sbjct: 132468 ccagatacaaatgaatttagg 132448
>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence Length = 113862 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 acaaatgaatttaggaatgaa 107 ||||||||||||||||||||| Sbjct: 53216 acaaatgaatttaggaatgaa 53236
>ref|XM_464737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 597 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtagtggcggtcgcagtagt 301 |||||||||||||||||||| Sbjct: 279 gtagtggcggtcgcagtagt 260
>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence Length = 173785 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 aactctatatacagactgaa 165 |||||||||||||||||||| Sbjct: 112238 aactctatatacagactgaa 112219
>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653), complete cds Length = 1420 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ccaaaactctcttgccctct 142 |||||||||||||||||||| Sbjct: 1156 ccaaaactctcttgccctct 1175
>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence Length = 176643 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 actctggagtctacctatta 191 |||||||||||||||||||| Sbjct: 16382 actctggagtctacctatta 16401
>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence Length = 181527 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tttctttcagtctgcaagag 239 |||||||||||||||||||| Sbjct: 82464 tttctttcagtctgcaagag 82445
>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence Length = 168721 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 actctggagtctacctatta 191 |||||||||||||||||||| Sbjct: 157887 actctggagtctacctatta 157906
>gb|DQ100347.1| Zea mays 9,10-9',10' carotenoid cleavage dioxygenase 1 (CCD1) gene, complete cds Length = 8665 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 tggctcggctcgccggtgaa 322 |||||||||||||||||||| Sbjct: 6330 tggctcggctcgccggtgaa 6349
>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA Length = 1420 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ccaaaactctcttgccctct 142 |||||||||||||||||||| Sbjct: 1156 ccaaaactctcttgccctct 1175
>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence Length = 180591 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 acaaatgaatttaggaatga 106 |||||||||||||||||||| Sbjct: 143624 acaaatgaatttaggaatga 143605
>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence Length = 188605 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 acaaatgaatttaggaatga 106 |||||||||||||||||||| Sbjct: 138484 acaaatgaatttaggaatga 138465
>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence Length = 178815 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acaaatgaatttaggaatga 106 |||||||||||||||||||| Sbjct: 152752 acaaatgaatttaggaatga 152771
>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence Length = 64373 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acaaatgaatttaggaatga 106 |||||||||||||||||||| Sbjct: 16772 acaaatgaatttaggaatga 16791
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtagtggcggtcgcagtagt 301 |||||||||||||||||||| Sbjct: 7024168 gtagtggcggtcgcagtagt 7024149
>gb|AC104801.4| Homo sapiens BAC clone RP11-356J12 from 2, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 aaaaatagactctggagtctacct 187 |||||||||| ||||||||||||| Sbjct: 44591 aaaaatagacactggagtctacct 44614
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtagtggcggtcgcagtagt 301 |||||||||||||||||||| Sbjct: 27587 gtagtggcggtcgcagtagt 27568
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gtagtggcggtcgcagtagt 301 |||||||||||||||||||| Sbjct: 117790 gtagtggcggtcgcagtagt 117771
>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete sequence Length = 145652 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tttctttcagtctgcaagag 239 |||||||||||||||||||| Sbjct: 46654 tttctttcagtctgcaagag 46635
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gctgactactctgtggtggt 259 |||||||||||||||||||| Sbjct: 1107079 gctgactactctgtggtggt 1107060
>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence Length = 38013 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acaaatgaatttaggaatga 106 |||||||||||||||||||| Sbjct: 12922 acaaatgaatttaggaatga 12941 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,323,074 Number of Sequences: 3902068 Number of extensions: 3323074 Number of successful extensions: 65312 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65209 Number of HSP's gapped (non-prelim): 103 length of query: 322 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 300 effective length of database: 17,147,199,772 effective search space: 5144159931600 effective search space used: 5144159931600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)