ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-bin... 31 0.76
2CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated n... 29 3.8
3NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protei... 28 6.4
4ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4 28 8.4
5NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protei... 28 8.4

>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)|
          Length = 280

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = -1

Query: 121 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 14
           GS GPF  L DTW V      PH  A E  D DS V
Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192



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>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 43  RHQSVAASLGTQHPRCPTGHQRGHYYHHYI 132
           R Q +A SLG +       H   H++HHY+
Sbjct: 176 RGQDLAGSLGNRGELLAADHSHPHHHHHYL 205



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>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 177 HLRVPTFGDALI*YQYVVMVVVAPLMTCWTPGMLCS*ACCHTLVPQNLWIMIV 19
           H      G A      +V+ V+A  + CWTP  L S     T +PQ   ++IV
Sbjct: 245 HSGAKALGKAKRKVSLLVLAVLAVGLLCWTPFHLASIVALTTDLPQTPLVIIV 297



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>ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4|
          Length = 484

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -2

Query: 126 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 10
           +  ++   +  WTP   M+     C T +P+ +W +  W C
Sbjct: 407 IFAILLAFIITWTPYNVMVLINTFCQTCIPETIWYIGYWLC 447



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>NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 333

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 129 VVMVVVAPLMTCWTPGMLCS*ACCHTLVPQ 40
           +V+VV+A  + CWTP  L S     T +PQ
Sbjct: 261 LVLVVLAVCLLCWTPFHLASVVALTTDLPQ 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,743,240
Number of Sequences: 219361
Number of extensions: 549426
Number of successful extensions: 1519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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