ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser... 28 7.6

>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 208 EGARTKDARQQGAKEKEKRMTPRSVSSQDDCRSS 309
           E  R+K+A ++  KEK+ R  PRS +S    RS+
Sbjct: 329 EKDRSKEADEKRKKEKKSRTPPRSYNSSRRSRSA 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,671,177
Number of Sequences: 219361
Number of extensions: 494947
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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