>RDRP_PVXCP (P22591) RNA replication protein (165 kDa protein) (ORF 1 protein)|
            [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
            Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 202  QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSS 324
            +P+ +  LDH+ Q C      S++S+A  +++ INT  NSS
Sbjct: 930  KPKVQIVLDHNTQVCSANVMYSALSRATDRIHFINTSANSS 970

>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)|
            [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
            Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 202  QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSS 324
            +P+ +  LDH+ Q C      +++S+A  +++ INT  NSS
Sbjct: 930  KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFINTSANSS 970

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
            [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
            Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 202  QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSS 324
            +P+ +  LDH+ Q C      +++S+A  +++ +NT  NSS
Sbjct: 930  KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSS 970

>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)|
            [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
            Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 202  QPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSS 324
            +P+ +  LDH+ Q C      +++S+A  +++ +NT  NSS
Sbjct: 930  KPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSANSS 970

>LPLC3_HUMAN (P59826) Long palate, lung and nasal epithelium|
           carcinoma-associated protein 3 precursor (Ligand-binding
           protein RYA3)
          Length = 476

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = -3

Query: 258 IGSVTLLCTVIQVRFPLWLIVYSA*LLFSVCDILLLPAVNSNFAVVEEVLSCLLGI 91
           +G ++L   ++    PL+ +V    +LF V   LL P V+S   VV E+L  +LG+
Sbjct: 168 LGHISLFSGLLPT--PLFGVVEQ--MLFKVLPGLLCPVVDSVLGVVNELLGAVLGL 219

>BOB1_YEAST (P38041) Protein BOB1 (BEM1-binding protein)|
          Length = 980

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +2

Query: 14  TLN*MMYHHICTSFSCYNNSRSCSSQM-PSKQLSTSSTTAKFEFTAG-SNKISQTEKRSY 187
           +L+ M  H   +S   + +S+S S+   P+KQ  T         +   SN  S    +SY
Sbjct: 578 SLSEMKKHRRNSSILSFFSSKSQSNPTSPTKQTFTIDPAKMTSHSRSQSNSYSHARSQSY 637

Query: 188 AE*TISHNGKRTWITVHSSVTEPIGPPVSPRLYTSFIRLIHLTTAPSN 331
                SH+ K      HS VT P+   +SP    S I L H  T  S+
Sbjct: 638 -----SHSRK------HSLVTSPLKTSLSPINSKSNIALAHSETPTSS 674

>KLHL5_HUMAN (Q96PQ7) Kelch-like protein 5|
          Length = 755

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 202 DCLLSVASLFSL*YFVASCCKF 137
           +CLLS A L  L   V +CCKF
Sbjct: 291 ECLLSTACLLQLSQVVEACCKF 312

>YL754_MIMIV (Q5UP08) Hypothetical protein L754|
          Length = 377

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 98  SKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNGKRTWITVH 238
           S +L   S T K++     NKI+ TE+  Y +  I+    +T  T H
Sbjct: 243 SHELYDKSNTDKYKLYLKENKITPTEQDIYEDQQITKTDVKTLFTTH 289

>CJ006_MOUSE (Q6P9P0) Protein C10orf6 homolog|
          Length = 1278

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/67 (20%), Positives = 31/67 (46%)
 Frame = +2

Query: 68  NSRSCSSQMPSKQLSTSSTTAKFEFTAGSNKISQTEKRSYAE*TISHNGKRTWITVHSSV 247
           N+++C+  +P K    SS+  +   +  S+K  +   ++    +   +GK +  ++HS  
Sbjct: 600 NAKNCTLPVPKKDKERSSSKERSGHSTESSKHKEHRAKTIKAVSNESSGKNSGGSLHSEY 659

Query: 248 TEPIGPP 268
             P   P
Sbjct: 660 APPTASP 666

>DYHC_ASHGO (Q9C1M7) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4083

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 259  WSSSISKALHKLYQINTPDN 318
            ++S ISK LH ++ IN PDN
Sbjct: 2871 FTSEISKNLHVIFNINDPDN 2890

>IRA1_YEAST (P18963) Inhibitory regulator protein IRA1|
          Length = 3092

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 193 VNNQPQWETHLDHSAQQCDRTNWSSSISKALHKLYQINTPDNSS 324
           VNN   +  H   S+ +   TN  +SISK   K   +N   N S
Sbjct: 368 VNNDHHYHLHHSSSSSKTTNTNSPNSISKTSIKQSSVNASGNVS 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,979,758
Number of Sequences: 219361
Number of extensions: 727297
Number of successful extensions: 2233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2233
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)