ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.6
2PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 28 5.6
3NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.6
4NADD_STRR6 (P65505) Probable nicotinate-nucleotide adenylyltrans... 28 5.6
5NADD_STRPN (P65504) Probable nicotinate-nucleotide adenylyltrans... 28 5.6
6FTSW_SYNY3 (P74180) Probable cell division protein ftsW 28 7.4
7XMAS1_DROME (Q9U3V8) Protein xmas-1 27 9.6
8APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4... 27 9.6
9ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.... 27 9.6
10KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4 27 9.6

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 281 CVCV-------CDKKLCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 144
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 92  PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSNPSCTHPYC 232
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 281 CVCV-------CDKKLCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 144
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>NADD_STRR6 (P65505) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 209

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 13  TEELATPKLKITTMPEVCQEKKKQ-RRAGGNITP 111
           T EL TP  K+   PE+ ++K+KQ    GGN  P
Sbjct: 2   TIELLTPFTKVELEPEIKEKKRKQVGILGGNFNP 35



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>NADD_STRPN (P65504) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 209

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 13  TEELATPKLKITTMPEVCQEKKKQ-RRAGGNITP 111
           T EL TP  K+   PE+ ++K+KQ    GGN  P
Sbjct: 2   TIELLTPFTKVELEPEIKEKKRKQVGILGGNFNP 35



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>FTSW_SYNY3 (P74180) Probable cell division protein ftsW|
          Length = 393

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 89 LRCFFFSWQTSGIVVIFSLGVA 24
          +R  FF+W   G+VV+FS   A
Sbjct: 29 MRTLFFAWMAMGVVVLFSASYA 50



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>XMAS1_DROME (Q9U3V8) Protein xmas-1|
          Length = 736

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   ETEETEELATPKLKITTMPEVCQEKKKQRRAGGN 102
           E EE E  A P+L+IT      +E + QRR  G+
Sbjct: 167 EDEEVERRAVPQLRITKEQSEEEEHQLQRRKDGS 200



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>APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)|
          Length = 452

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 77  KNNGGPEGTSHHRLHYWAKQGIFS 148
           K  GGPE  + H + YW K  + S
Sbjct: 303 KIQGGPEIQNSHSMRYWKKSAVIS 326



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>ACV1C_HUMAN (Q8NER5) Activin receptor type 1C precursor (EC 2.7.11.30)|
           (ACTR-IC) (Activin receptor-like kinase 7) (ALK-7)
          Length = 493

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 335 RRDLMLLCYPCLLTPELACVC-VCDKKLCRCMNN*GNKGAC 216
           R+ L+LL     L+P L CVC +CD     C      +GAC
Sbjct: 10  RQALLLLAAAAELSPGLKCVCLLCDSSNFTCQ----TEGAC 46



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>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4|
          Length = 520

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  KNNGGPEGTSHHRLHYWAKQ 136
           K+ GGP G S HR+  W +Q
Sbjct: 169 KSTGGPSGRSGHRMVAWKRQ 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,531,384
Number of Sequences: 219361
Number of extensions: 1037144
Number of successful extensions: 2515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2513
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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