Clone Name | rbastl46a08 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 250 bits (126), Expect = 3e-63 Identities = 142/147 (96%), Gaps = 4/147 (2%) Strand = Plus / Minus Query: 117 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 177 agctgagctgagcttccgcatgccgatcaaacccgtcgtgcacgcaccc----ttattgc 232 ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 233 cttaattattcatgcaccggcacaact 259 ||||||||||||||||||||||||||| Sbjct: 2776 cttaattattcatgcaccggcacaact 2750 Score = 99.6 bits (50), Expect = 6e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 282 agctagctccggtgtaagcaagcagggatagcacaaaagcatgaggtctcgacgacggac 341 |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668 Query: 342 gt 343 || Sbjct: 2667 gt 2666
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 110 catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 159 ||||||||| ||||||||||||| |||||| |||||||| ||||||||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050 Score = 44.1 bits (22), Expect = 0.29 Identities = 41/46 (89%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 192 ccgcatgccgatcaaacccgtcgtgcacgcac-ccttattgcctta 236 ||||||||||||| ||||||||||||| ||| | ||||||||||| Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 224 ccttattgccttaattattcatg 246 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 224 ccttattgccttaattattcatg 246 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagaggagct 23 ||||||||||||||||||||||| Sbjct: 33748 gaaacagaggaaacagaggagct 33770
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 224 ccttattgccttaattattcatg 246 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 224 ccttattgccttaattattcatg 246 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence Length = 232817 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 aacagaggaaacagaggagcttgcaa 28 ||||||||||||||||||| |||||| Sbjct: 33676 aacagaggaaacagaggagattgcaa 33651
>gb|AC124443.3| Mus musculus chromosome 18 clone RP24-178K3, complete sequence Length = 169326 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 3 aacagaggaaacagaggagcttgcaa 28 ||||||||||||||||||| |||||| Sbjct: 36220 aacagaggaaacagaggagattgcaa 36245
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 aaacaagggattttttctgca 151 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 gcaaaacaagggattttttct 148 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>ref|NM_122199.1| Arabidopsis thaliana unknown protein AT5G22930 mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 45 gaaacagaggaaacagagga 26
>ref|NM_127253.1| Arabidopsis thaliana unknown protein AT2G17000 mRNA, complete cds Length = 2550 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 262 gaaacagaggaaacagagga 281
>ref|XM_471832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3171 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 2836 gaaacagaggaaacagagga 2855
>gb|AC160545.8| Mus musculus chromosome 1, clone RP23-217K18, complete sequence Length = 240081 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acagaggaaacagaggagct 23 |||||||||||||||||||| Sbjct: 122557 acagaggaaacagaggagct 122538
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 113480 gaaacagaggaaacagagga 113499
>gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA clone MGC:89374 IMAGE:6988658), complete cds Length = 3668 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ggaaacagaggagcttgcaa 28 |||||||||||||||||||| Sbjct: 3127 ggaaacagaggagcttgcaa 3146
>gb|AY693277.1| Saccharomyces cerevisiae clone FLH114745.01X YPR130C gene, complete cds Length = 408 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 200 gaaacagaggaaacagagga 181
>gb|AY693234.1| Saccharomyces cerevisiae clone FLH158351.01X YPR129W gene, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 896 gaaacagaggaaacagagga 915
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence, complete sequence Length = 125021 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 968 aaacagaggaaacagaggag 987
>gb|U40829.1|YSCP9659 Saccharomyces cerevisiae chromosome XVI cosmid 9659 Length = 43281 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 2537 gaaacagaggaaacagagga 2556
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 ggagggaacatcacaccatc 113 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>emb|AL663022.4|OSJN00222 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14, complete sequence Length = 160587 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 78330 aaacagaggaaacagaggag 78311
>emb|AL663005.3|OSJN00208 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062H02, complete sequence Length = 166747 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 12157 gaaacagaggaaacagagga 12176
>emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01, complete sequence Length = 166906 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 58000 aaacagaggaaacagaggag 58019
>dbj|AK164419.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230016I11 product:unclassifiable, full insert sequence Length = 3499 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acagaggaaacagaggagct 23 |||||||||||||||||||| Sbjct: 1712 acagaggaaacagaggagct 1693
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 15061869 aaacagaggaaacagaggag 15061850 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 14855419 gaaacagaggaaacagagga 14855438 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 14325080 aaacagaggaaacagaggag 14325099
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 13755671 gaaacagaggaaacagagga 13755690
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 26 caacgcccaaactgaaaatcacaacaatgcct 57 |||| ||||||||||||| | ||||||||||| Sbjct: 18830365 caactcccaaactgaaaaactcaacaatgcct 18830396
>ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC89374), mRNA Length = 3668 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ggaaacagaggagcttgcaa 28 |||||||||||||||||||| Sbjct: 3127 ggaaacagaggagcttgcaa 3146
>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete sequence Length = 104679 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaacagaggaaacagaggag 21 |||||||||||||||||||| Sbjct: 93915 aaacagaggaaacagaggag 93934
>gb|AC002354.2|AC002354 Arabidopsis thaliana chromosome II section 98 of 255 of the complete sequence. Sequence from clones F12A24, F6P23 Length = 90952 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 15993 gaaacagaggaaacagagga 15974
>dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17 Length = 86065 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 63415 gaaacagaggaaacagagga 63434
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 26 caacgcccaaactgaaaatcacaacaatgcct 57 |||| ||||||||||||| | ||||||||||| Sbjct: 133814 caactcccaaactgaaaaactcaacaatgcct 133845
>dbj|AK121570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035J21, full insert sequence Length = 3743 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 3066 gaaacagaggaaacagagga 3085
>dbj|AK072298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016M03, full insert sequence Length = 3490 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 2233 gaaacagaggaaacagagga 2252
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 13837669 gaaacagaggaaacagagga 13837688
>dbj|AP004925.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079b, complete sequence Length = 33290 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 18765 gaaacagaggaaacagagga 18784
>gb|U30384.1|SCU30384 Saccharomyces cerevisiae Scd6p (SCD6) gene, complete cds Length = 2006 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaacagaggaaacagagga 20 |||||||||||||||||||| Sbjct: 1436 gaaacagaggaaacagagga 1455
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 agaggaaacagaggagcttg 25 |||||||||||||||||||| Sbjct: 11891 agaggaaacagaggagcttg 11910 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,315,128 Number of Sequences: 3902068 Number of extensions: 2315128 Number of successful extensions: 48530 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48397 Number of HSP's gapped (non-prelim): 132 length of query: 343 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 321 effective length of database: 17,147,199,772 effective search space: 5504251126812 effective search space used: 5504251126812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)