>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage|
            complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 371  KEEKEMSVPADENQT--TCALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHL 198
            KE++  SVPA       +C +CQE FE ++ +E EEW  K A+ ++              
Sbjct: 1524 KEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVD-------------- 1569

Query: 197  GPIVHSKCQSGPSNIS 150
            G I H  C     N S
Sbjct: 1570 GKIYHPSCYEDYQNTS 1585

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -1

Query: 404 SFEPTEPIPDKKEEKEMSVPADENQTT-CALCQEPFEDFYSDETEEWMYKGAVYMNAPDG 228
           S E  E   DK EE    V +   +T  C++C E F+++Y D+ E W  +  V ++    
Sbjct: 734 SDETNEQEADKPEEPLPGVASSGVKTKECSVCGEKFDEYYDDDEETWRLRDTVNVH---- 789

Query: 227 NIVGLQRSHLGPIVHSKCQS 168
                     G IVHS C S
Sbjct: 790 ----------GKIVHSACAS 799

>POL2_GCMV (P13026) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1324

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
 Frame = -1

Query: 449 EWLRAAETVGNDGVPSFEPTEPIP-----------DKKEEKEMSVPADENQTTCALCQEP 303
           +W++AA+ +    VPSFE   PIP           + KEE  + +PA +  T   +    
Sbjct: 226 KWMQAAQIMRTCAVPSFE--NPIPGQFGYERLYNGEGKEEYWLQIPATDKYTDLII---- 279

Query: 302 FEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVH 183
                      W  K       P  +++  +R+ +GP +H
Sbjct: 280 ---------NWWHAKNTPGWEEPSSSLMDFKRNRMGPCLH 310

>BUD14_YEAST (P27637) Bud site selection protein BUD14|
          Length = 707

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -1

Query: 413 GVPSFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFEDFYSDE 279
           G+P+    E  P ++ EK  S P +E Q+T +L     EDFY DE
Sbjct: 605 GMPNQTDAEQ-PKEELEKHHSTPEEEKQSTLSLHSSSEEDFYMDE 648

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -1

Query: 323 CALCQEPFEDFYSDETEEWMYKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS*V 144
           C +CQE F+  + +E E W++  AV       +   LQ        HS   +   N++  
Sbjct: 519 CPICQEKFQSVWHEEAEVWVFMNAVEEEGRIFHATCLQEVRPSENKHSNTNTSTQNLAEA 578

Query: 143 GVA 135
            V+
Sbjct: 579 AVS 581

>EF1G_CARAU (Q90YC0) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 442

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 431 ETVGNDGVPSFEPTEPIPDKKEEKEMSVPADENQTTC--ALCQEP 303
           E  G +G    +P +   +KK+E++ + PA+E    C  AL  EP
Sbjct: 235 EKAGKEGGKQQQPQQEKKEKKKEEKKAAPAEEEMDECEAALASEP 279

>PYR1_DICDI (P20054) Protein PYR1-3 [Includes: Glutamine-dependent|
           carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
           carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
           3.5.2.3)]
          Length = 2185

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = -1

Query: 425 VGNDGVPSFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEWMYKGAVY 246
           +GN GVPSF   +P    +    ++  +D+      +C E     Y DE   W  + ++ 
Sbjct: 25  IGNYGVPSFRERDP----ESGLAVNFESDKAHVQAIICSE-----YCDEYSHWAAEKSLS 75

Query: 245 MNAPDGNIVGL 213
               + NI GL
Sbjct: 76  EWLKESNIPGL 86

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 323 CALCQEPFEDFYSDETEEWMYKGAVYMN 240
           C +C+E     Y +E+ EW++K  + +N
Sbjct: 564 CPICKETVTGVYDEESGEWVWKNTIEVN 591

>ECM18_YEAST (Q04623) Extracellular matrix protein 18|
          Length = 453

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -1

Query: 422 GNDGVPSFE--PTEPIP-DKK--EEKEMSVPADENQTTCALCQEPFEDFYSDETEEW 267
           G   VPS E   T P+P D K   E +  VP   N        + +EDFY D  E+W
Sbjct: 165 GLSSVPSLEINTTTPLPLDIKFIGENKFKVPYTINANHNKFVIQMYEDFYLDRIEQW 221

>TF2B1_ARATH (P48512) Transcription initiation factor IIB-1 (General|
           transcription factor TFIIB-1) (AtTFIIB1)
          Length = 312

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 377 DKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEW 267
           D K+E E+ V      T C+ C    E    DET EW
Sbjct: 8   DCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEW 44

>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)|
          Length = 3053

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 416  DGVPSFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEWMYKG 255
            D  P FEP  P+PDK E K      +E       C       +  E++EW  +G
Sbjct: 1161 DDGPHFEPVVPLPDKIEVKTGEEDEEE-----FFCNRAKLFRFDGESKEWKERG 1209

>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein|
            Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
          Length = 3224

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 419  NDGVPSFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEWMYKG 255
            +D  P FEP  P+PDK E K      +E       C       +  E++EW  +G
Sbjct: 1166 DDDGPHFEPVVPLPDKIEVKTGEEDEEE-----FFCNRAKLFRFDVESKEWKERG 1215

>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196|
          Length = 892

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 443 LRAAETVGNDGVPSFEPTEPIPDKKEEKEMSVPADENQ 330
           +R  +TV       F+P  P  DK E K+   P  ENQ
Sbjct: 45  VRGGQTVPGQAPLCFDPGSPASDKTEGKKKGRPKAENQ 82

>ETF1_VARV (P33056) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   YRKRQKIWSRV*YCHFVKLQGQGYMI 79
           Y  R+ + +RV YCH  KLQ + YMI
Sbjct: 235 YHGRKFLDTRVVYCHMSKLQERDYMI 260

>ETF1_VACCV (P04308) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   YRKRQKIWSRV*YCHFVKLQGQGYMI 79
           Y  R+ + +RV YCH  KLQ + YMI
Sbjct: 235 YHGRKFLDTRVVYCHMSKLQERDYMI 260

>ETF1_VACCT (Q9JFA3) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   YRKRQKIWSRV*YCHFVKLQGQGYMI 79
           Y  R+ + +RV YCH  KLQ + YMI
Sbjct: 235 YHGRKFLDTRVVYCHMSKLQERDYMI 260

>ETF1_VACCC (P20634) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   YRKRQKIWSRV*YCHFVKLQGQGYMI 79
           Y  R+ + +RV YCH  KLQ + YMI
Sbjct: 235 YHGRKFLDTRVVYCHMSKLQERDYMI 260

>ETF1_VACCA (O93120) Early transcription factor 70 kDa subunit (EC 3.6.1.-)|
           (ATP-dependent helicase VETFS) (VETF small subunit)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   YRKRQKIWSRV*YCHFVKLQGQGYMI 79
           Y  R+ + +RV YCH  KLQ + YMI
Sbjct: 235 YHGRKFLDTRVVYCHMSKLQERDYMI 260

>ATCY_SCHPO (O14022) Probable cation-transporting ATPase C29A4.19c (EC 3.6.3.-)|
          Length = 1096

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 261 VHPLFSFIAVEILKWL---LT*STCCLVFI 341
           +HP + F AV +L WL       +CC+VFI
Sbjct: 200 LHPFYLFQAVSVLIWLCDSFVFYSCCIVFI 229

>SPAG5_MOUSE (Q7TME2) Sperm-associated antigen 5 (Mastrin) (Mitotic|
            spindle-associated protein p126) (MAP126)
          Length = 1165

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 404  SFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFED 294
            SF+PTE    +K   EMS    E ++ C+L QE  E+
Sbjct: 929  SFQPTETPDLEKSLAEMSTVLQELKSLCSLLQESKEE 965

>BCSB3_ACEXY (Q9WX62) Cyclic di-GMP-binding protein precursor (Cellulose|
           synthase regulatory subunit) (Cellulose synthase protein
           B) (CDGBP)
          Length = 804

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
 Frame = -1

Query: 434 AETVGNDGVPSFEPTEPIPDKKEEKEMSVPADENQTTCALCQEPFEDFYSDETEEWM--- 264
           A  + ND  PSF PT       E   +S    E  T   L   PF    S +   W    
Sbjct: 369 APRLANDA-PSFIPTSRPVRLGELVPVSALQGEGYTPGVL-SVPFR--VSPDLYTWRDRP 424

Query: 263 YKGAVYMNAPDGNIVGLQRSHLGPIVHSKCQSGPSNIS*VGVAGEYLCNFSL 108
           YK  V   APDG I+ + RSHL                 VG+   YL ++SL
Sbjct: 425 YKLNVRFRAPDGPILDVARSHLD----------------VGINNTYLQSYSL 460


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,784,917
Number of Sequences: 219361
Number of extensions: 1555603
Number of successful extensions: 4142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4140
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)