>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 209 APTSEGSLTESLSWSFVLRPCSISAPT 289
           AP S GSLT S+S    LRP S+++PT
Sbjct: 399 APASVGSLTGSISPRLSLRPPSMASPT 425

>PKHB1_MOUSE (Q9QYE9) Pleckstrin homology domain-containing family B member 1|
           (Pleckstrin homology domain retinal protein 1) (PH
           domain-containing protein in retina 1) (PHRET1)
          Length = 243

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 388 GPVKLTPGAKHILVPSDSTHGDSMPVYSCLSFGSRSGNAAGS 263
           GP    PG  H++V  D  +    P+   +  G+ +G A GS
Sbjct: 194 GPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALGS 235

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein|
           1 (PRAX-1) (Peripheral benzodiazepine
           receptor-interacting protein) (PBR-IP) (RIM-binding
           protein 1) (RIM-BP1)
          Length = 1857

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 376 LTPGAKHILVPSDSTHGDSMPVYSCLSFGSRSG 278
           L  G  HI V + ++ G S P+  CL+ G+R+G
Sbjct: 850 LWAGPLHISVQALTSRGSSDPLRCCLAVGARAG 882

>PKHB1_HUMAN (Q9UF11) Pleckstrin homology domain-containing family B member 1|
           (Pleckstrin homology domain retinal protein 1) (PH
           domain-containing protein in retina 1) (PHRET1)
          Length = 243

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 388 GPVKLTPGAKHILVPSDSTHGDSMPVYSCLSFGSRSGNAAGS 263
           GP    PG  H++V  D  +    P+   +  G+ +G A GS
Sbjct: 194 GPPYAGPGVTHVIVREDPCYSAGAPLAMGMLAGAATGAALGS 235

>TRI_THEAC (P96086) Tricorn protease (EC 3.4.21.-)|
          Length = 1071

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 397 KRSGPVKLTPGAKHILVPSDSTHGDSMPVYSCLSFGSRSGNAAGSQNKG 251
           KRS P+ + PG   +++P +S    S+ +YS    G  +    G+  KG
Sbjct: 573 KRSSPINVDPGDYRMIIPLES----SILIYSVPVHGEFAAYYQGAPEKG 617

>PAGO_SALTY (O30646) Protein pagO|
          Length = 304

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -2

Query: 172 SCTNSCHTFSCFICLLGSYFLS*TCIHGWCIPKACTLIFSVF-----L*I*MISGI-GRL 11
           SCT S  TF+   CLL    LS T   GW   +     FSV      L +   +G+ G L
Sbjct: 174 SCTVSVITFNALPCLLAGLILSAT---GWFFERPQVSTFSVHSILATLYLGAFAGVFGIL 230

Query: 10  CY 5
           CY
Sbjct: 231 CY 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,474,644
Number of Sequences: 219361
Number of extensions: 969104
Number of successful extensions: 2094
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)