ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl46a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PANX1_PONPY (Q5REE3) Pannexin-1 31 1.2
2PANX1_HUMAN (Q96RD7) Pannexin-1 31 1.2
3PANX1_RAT (P60570) Pannexin-1 30 2.1
4PANX1_MOUSE (Q9JIP4) Pannexin-1 30 2.1
5EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocy... 30 2.7
6SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor 29 6.0
7PLTP_HUMAN (P55058) Phospholipid transfer protein precursor (Lip... 28 7.9

>PANX1_PONPY (Q5REE3) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 224 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 400
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 401 VQLYSRPLF 427
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 224 QLSRFQPSSFLWNPKAMMTVLCWMKILQMG*VAVEA-LLGCRLHCSYF*HQPDQCLLSES 400
           Q+S F PSSF W   A +   CW  + Q   +  E+  L   LH  +        LL  +
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPLWLHKFF-----PYILLLFA 117

Query: 401 VQLYSRPLF 427
           + LY  PLF
Sbjct: 118 ILLYLPPLF 126



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>PANX1_RAT (P60570) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 224 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 307
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 224 QLSRFQPSSFLWNPKAMMTVLCWMKILQ 307
           Q+S F PSSF W   A +   CW  + Q
Sbjct: 63  QISCFSPSSFSWRQAAFVDSYCWAAVQQ 90



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>EXOC2_CAEEL (Q22706) Probable exocyst complex component 2 (Exocyst complex|
           component Sec5)
          Length = 884

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 291 G*RFCKWVKWPLRLSSAAVFTALIFSTSLINASFQNLFSCTHARCSIPL 437
           G +F KW   P  +S + +  +L  + SLI++  +N FS TH +  + L
Sbjct: 495 GDQFAKWPTVPADISRSNLQLSLKTTRSLISSLLENQFSLTHVQPLVEL 543



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>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor|
          Length = 2213

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 18   YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 194
            YK+Y  ++ S+ +++       LPE  V  K+ TS+       ++F+ AG GP    +Q 
Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795

Query: 195  YFHLLAVGFINFLAFN 242
              H  A G  +FLAF+
Sbjct: 1796 RTHQAAPGAPSFLAFS 1811



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>PLTP_HUMAN (P55058) Phospholipid transfer protein precursor (Lipid transfer|
           protein II)
          Length = 493

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 8   TSKLQSLLSEEYIQTTK*TQELSNYTTRILSGKEKHF---IC*LKVTDCQFPSCRFRSK* 178
           TSK   L+ +E ++  +  QEL   T   L GKE HF   I  +KVT+ Q  S     + 
Sbjct: 27  TSKALELVKQEGLRFLE--QELETITIPDLRGKEGHFYYNISEVKVTELQLTSSELDFQP 84

Query: 179 QEKTII 196
           Q++ ++
Sbjct: 85  QQELML 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,467,748
Number of Sequences: 219361
Number of extensions: 936284
Number of successful extensions: 2508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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