ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl45h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q300_MOUSE (Q02722) Protein Q300 30 1.6
2PHXR4_MOUSE (P15974) Putative per-hexamer repeat protein 4 29 2.7
3LTB1S_MOUSE (Q8CG18) Latent transforming growth factor beta-bind... 29 2.7
4CP6G1_DROME (Q9V674) Cytochrome P450 6g1 (EC 1.14.-.-) (CYPVIG1)... 28 4.6
5KAPR_DICDI (P05987) cAMP-dependent protein kinase regulatory sub... 28 4.6
6CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1) 28 6.1
7LTB1S_HUMAN (P22064) Latent transforming growth factor beta-bind... 28 6.1
8LTBP1_RAT (Q00918) Latent transforming growth factor beta-bindin... 28 6.1
9LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-bind... 28 6.1
10CR015_HUMAN (Q96N68) Protein C18orf15 28 7.9

>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 74 CMCVCISVCVCTV 36
          C+CVC+ VCVCT+
Sbjct: 30 CVCVCVCVCVCTL 42



 Score = 27.7 bits (60), Expect = 7.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 74 CMCVCISVCVC 42
          C+CVC+ VCVC
Sbjct: 28 CVCVCVCVCVC 38



to top

>PHXR4_MOUSE (P15974) Putative per-hexamer repeat protein 4|
          Length = 95

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 80 GECMCVCISVCVC 42
          G C+CVC SVC+C
Sbjct: 8  GVCLCVCFSVCMC 20



to top

>LTB1S_MOUSE (Q8CG18) Latent transforming growth factor beta-binding protein,|
           isoform 1S precursor (LTBP-1) (Transforming growth
           factor beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1389

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +2

Query: 41  YRHKRLYIHTYTHPISKMLVTCFRENTLLQLFWPLPGL----*LCRRFITSRGFGNC 199
           Y H++L  H Y       L  CF+E    Q    LPGL      C    TS GF  C
Sbjct: 207 YSHQQLIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKC 263



to top

>CP6G1_DROME (Q9V674) Cytochrome P450 6g1 (EC 1.14.-.-) (CYPVIG1) (Cyp6-like|
           protein)
          Length = 524

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 142 TARFITVSAVHHQPWFWKLPLQLQQDR 222
           T  FI + A+HH P +W  P Q   +R
Sbjct: 408 TPVFIPIYALHHDPKYWTNPSQFDPER 434



to top

>KAPR_DICDI (P05987) cAMP-dependent protein kinase regulatory subunit|
          Length = 327

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 117 ILYFSCSGHCQVYNCVGGSSPAVVLE 194
           + Y   SG C +Y C  G SP +V+E
Sbjct: 102 LFYVIDSGICDIYVCQNGGSPTLVME 127



to top

>CP4Z1_HUMAN (Q86W10) Cytochrome P450 4Z1 (EC 1.14.14.1) (CYPIVZ1)|
          Length = 505

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 151 FITVSAVHHQPWFWKLP 201
           FI + A+HH P+FW+ P
Sbjct: 405 FINIWALHHNPYFWEDP 421



to top

>LTB1S_HUMAN (P22064) Latent transforming growth factor beta-binding protein,|
           isoform 1S precursor (LTBP-1) (Transforming growth
           factor beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1394

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +2

Query: 41  YRHKRLYIHTYTHPISKMLVTCFRENTLLQLFWPLPGL----*LCRRFITSRGFGNC 199
           Y H+++  H Y       L  CF+E    Q    LPGL      C    TS GF  C
Sbjct: 212 YSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKC 268



to top

>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1|
           precursor (LTBP-1) (Transforming growth factor
           beta-1-binding protein 1) (TGF-beta-1-BP-1)
           (Transforming growth factor beta-1-masking protein,
           large subunit)
          Length = 1712

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +2

Query: 41  YRHKRLYIHTYTHPISKMLVTCFRENTLLQLFWPLPGL----*LCRRFITSRGFGNC 199
           Y H+++  H Y       L  CF+E    Q    LPGL      C    TS GF  C
Sbjct: 530 YSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKC 586



to top

>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,|
           isoform 1L precursor (LTBP-1) (Transforming growth
           factor beta-1-binding protein 1) (TGF-beta1-BP-1)
          Length = 1595

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +2

Query: 41  YRHKRLYIHTYTHPISKMLVTCFRENTLLQLFWPLPGL----*LCRRFITSRGFGNC 199
           Y H+++  H Y       L  CF+E    Q    LPGL      C    TS GF  C
Sbjct: 413 YSHQQVIPHVYPVAAKTQLGRCFQETIGSQCGKALPGLSKQEDCCGTVGTSWGFNKC 469



to top

>CR015_HUMAN (Q96N68) Protein C18orf15|
          Length = 181

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 74  CMCVCISVCVC 42
           CMCVC+ VC C
Sbjct: 132 CMCVCVHVCAC 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,108,921
Number of Sequences: 219361
Number of extensions: 733125
Number of successful extensions: 2035
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top