>CUBN_MOUSE (Q9JLB4) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
          Length = 3623

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 28  STTQEKNSASVEQSSLISIS*VESNQCQEHTLC*NS*GYFLLQLLPSAYLLNGYQKLEPG 207
           S T++K+  S++ S            C EH  C N+ G F     P  +  NGYQ  +  
Sbjct: 256 SCTEDKDECSLQPSP-----------CSEHAQCFNTQGSFYCGACPKGWQGNGYQ-CQDI 303

Query: 208 TKALYSLSHCSNAPITGAAN 267
            +   +   CS AP+    N
Sbjct: 304 NECEINNGGCSQAPLVPCLN 323

>CUBN_RAT (O70244) Cubilin precursor (Intrinsic factor-cobalamin receptor)|
           (Intrinsic factor-vitamin B12 receptor) (Glycoprotein
           280) (gp280) (460 kDa receptor)
          Length = 3623

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +1

Query: 28  STTQEKNSASVEQSSLISIS*VESNQCQEHTLC*NS*GYFLLQLLPSAYLLNGYQKLEPG 207
           S T++K+  S++ S            C EH  C N+ G F     P  +  NGY+  +  
Sbjct: 256 SCTEDKDECSLQPSP-----------CSEHAQCFNTQGSFYCGACPKGWQGNGYE-CQDI 303

Query: 208 TKALYSLSHCSNAPITGAANKAISLS 285
            +   +   CS AP+    N   S S
Sbjct: 304 NECEINNGGCSQAPLVPCLNTPGSFS 329

>LFRR_VIBVU (Q8DAR7) Putative bifunctional amino-acid-tRNA--protein transferase|
           [Includes: Leucyl/phenylalanyl-tRNA--protein transferase
           (EC 2.3.2.6) (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase); Arginyl-tRNA--protein
           transferase (EC 2.3
          Length = 469

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 6   KIITWFSFYNARE---K*CKCRTIITHQHLLG*IKSMPRTHAVLKLIRLLSAAVTA*CLP 176
           KI  W+   +  E   K   C+ + +H H LG   ++PR   + +L+ L    VT+ C  
Sbjct: 170 KIALWYFCRHFSEHGGKLIDCQVMNSHLHSLGAF-TLPREEFLQRLLCLKQQRVTSGCFS 228

Query: 177 SQWIPKTGTRHK 212
            QW+     RHK
Sbjct: 229 PQWL----KRHK 236

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 354  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 241
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 354  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 241
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773

>UVRC_VIBF1 (Q5E4C5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 608

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 208 TKALYSLSHCSNAPITGAANKAISLSYNHVYMPLPKY 318
           TKAL S  H  +  +T +  +A+ L +N++   LPKY
Sbjct: 55  TKALVSHIHQVDVTVTHSETEALILEHNYIKQYLPKY 91

>KUP2_LACAC (Q5FLF5) Probable potassium transport system protein kup 2|
          Length = 671

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 181 NGYQKLEPGTKALYSLSHCSNAPITGAANKAISLSYNHVYMPLPKYFSYV 330
           N Y +L+  T+ L  LSHC + P+          + N VYM   KY  ++
Sbjct: 461 NAYVRLDEYTEMLTDLSHCEDYPV---------YATNVVYMAKVKYNKFI 501

>KJF7_YEAST (P47042) Probable serine/threonine-protein kinase YJL057C (EC|
           2.7.11.1)
          Length = 667

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 115 HTLC*NS*GYFLLQLLPSAYLLNGYQKLEPGTKALYSLSHCSNAPITGAANKAISLSYNH 294
           HT+     G F L+ +P    +  + K     KAL SL+H S          A  ++YNH
Sbjct: 192 HTIGNTELGVFALKKIPIGNDMEWFNKCIREVKALSSLTHKS----------ANLITYNH 241

Query: 295 VYMPLPKYFSYVPAL 339
           V++ +     +V ++
Sbjct: 242 VWLEMDSSVGFVRSI 256

>THIX_CORGL (P42461) Thiamine biosynthesis protein X precursor|
          Length = 190

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 232 GIDCTMPLCLVPVFGIH*EG 173
           G+DCT   C+  VFG H EG
Sbjct: 157 GLDCTTQACVAKVFGDHTEG 176

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 327 CTSFALHKQSNIYTSGVYLTQDNE 398
           CT +A H   +IY SG Y+T D +
Sbjct: 849 CTRYACHSTCSIYGSGHYITFDGK 872

>TAH18_CANGA (Q6FRH1) Probable NADPH reductase TAH18 (EC 1.-.-.-)|
          Length = 621

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 145 FLLQLLPSAYLLNGYQKLEPGTKALYSLSHCSNAPITGAANK 270
           FL   LP  YLL+ +  ++P   ++ S ++C+N  +T A  K
Sbjct: 391 FLSIRLPLEYLLDFFPPIKPRLYSISSTANCNNIELTVAIVK 432

>SDR1_PICAB (Q08632) Short-chain type dehydrogenase/reductase (EC 1.-.-.-)|
          Length = 271

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 250 ITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSISLRTMKSAC 408
           + G   + I++S + V MP+P+Y +Y  +       T IL   +    + + C
Sbjct: 154 VRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANC 206

>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase su
          Length = 838

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 274 ISLS-YNHVYM--PLPKYFSYVPALLYTNKATSILV 372
           +SLS +NH+Y   PL  YF ++P +++ +     LV
Sbjct: 553 VSLSLFNHIYFKKPLNIYFGFIPEIIFMSSLFGYLV 588

>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a|
           isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit)
           (Vacuolar proton pump subunit 1) (Vacuolar adenosine
           triphosphatase
          Length = 839

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 274 ISLS-YNHVYM--PLPKYFSYVPALLYTNKATSILV 372
           +SLS +NH+Y   PL  YF ++P +++ +     LV
Sbjct: 560 VSLSLFNHIYFKKPLNIYFGFIPEIIFMSSLFGYLV 595

>MBD2_HUMAN (Q9UBB5) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding|
           protein MBD2) (Demethylase) (DMTase)
          Length = 411

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +1

Query: 154 QLLPSAYLLNGYQKLEPGTK------ALYSLSHCSNAPITGAANKAI 276
           Q++ +  L  G Q + PG+       A+ S  H S+APITG  + A+
Sbjct: 298 QIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSAAV 344

>MBD2_MOUSE (Q9Z2E1) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding|
           protein MBD2)
          Length = 414

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +1

Query: 154 QLLPSAYLLNGYQKLEPGTK------ALYSLSHCSNAPITGAANKAI 276
           Q++ +  L  G Q + PG+       A+ S  H S+APITG  + A+
Sbjct: 301 QIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSAAV 347

>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog|
          Length = 1817

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 65  NHHSSASPRLNQINAKNTRC 124
           N HSS +P+ N++  K+TRC
Sbjct: 594 NVHSSKAPKKNRLRRKSTRC 613


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,625,243
Number of Sequences: 219361
Number of extensions: 1087830
Number of successful extensions: 2343
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)